RNA id: TU120166


Basic Information

Item Value
RNA id TU120166
length 1820
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G101478
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18650442 ~ 18652261 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtgagttgcagtagtccagtcttgaaatgacaagggactgaacaagcacctgtgtggcctgtgtggaatggacgaattcttctgatgttataaaggagaaatcaacatgagcgtgtcagattagcaatgtgagaggagaaggacagttgattgtccatggttaccccaaggttgcatgcagtaaccgaaggcgagatcagagaattgtctagggagattgcaagatcctgagatggggatgaatcacctgggatgaacagcagttcagttttggtgggattaagtttcagctgatgagccgtcatccatgatgagatgtctgccagacatgctgatatccgagcagaaacatgagtgtctgagggagggaaggagaggatgagttgagtgtcatctgcatagcagtggtatgaaaacccatgtgaggatatgaccgcaccaagagatcaagaatagagggagaacaggagtggactaagtactgagccttgtggaacaccagtggagagtctgcagggagcagatgtggatcccctccatgtcacctgatttgaccgaccttccaggtaggaagcaaaccattgccatgctgcatcacgaattcctaggctcatgagggtggacaagagagtcttgtggttcactgtgtcaaacgctactgaaaggtcaaggaggatgaggactgaagacagtttggctgatctagcggcatgtaacttctcagtgacggccaaaggggcagtctctgtggagtgtgccggtttgagGCCAGACttattgggatcttggaggctgtgagagatagcaagacagctgattatagatagttcgttcaagggttttagaaagaaaagagagaagtgataccggtcggtagttgctgatgtcggAGGGATCTATAGTGGGtttcctcagtgtgtagtgtaggagtagaagtgaatgtctggcagatttttccaatcctctcatcataaaaagtggcaatgtcttcagcagtcagggaggatggagcaggaggagctggagggttgagtagtgaagaaaagatgttgtggagcttgcgaggatcttgtgcagaggattccagcttttctttgtagaaggcagtcttagcagaagtcacttcagatgaaaatttggacaggagagcacggtaggagacaagatctgtgtcgagttgcgatttcttccacttcctctcagctgttcttaattctctccgattACTGTGTAACACATCTGATAGCCAAGGGACAGGGCAGGAAATCTTGCTGGGTGTAGAAgatagaggacagaggaggtccaaggatgaggaaagtgaggagatgaaagtgtcagtggctagctccaatggtagggaggaaaaggagtcagggacaggaagggatgatagggtgcaggaagctaaggaggaaggggagatagagtggaggtttttatgagtgggagagaagtatagatggctggtggttttaggcaggatagggagggcgatggtgaaggataccaagagatggtcagagatgtggagagggGTAGCATAGATGTCTGTAGTAGGGAAGGGGCGGCTGAAGACAAGGTCCAGGGTGTTACCTCCTTTATGTGTAGGAGAACAGCTGTTGAAAGTTAAGGAAAAGGAATGGAGAAGAGGTagaaggcaagaggactggagcttgtcagCGGGGAGGTTGAAATCTCCGAGGACAGTAAGAGGGGTGTGAGTAGAGAAAAGACTGAggagcatgtccatttcttcaaggaAGGCCCCAAGGGGACCAGGAGGTCGGTAGATGACAACAATGAGAAGGTTGACTGGAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120105 lncRNA downstream 51075 18598851 ~ 18599367 (-) True G101420
TU120103 lncRNA downstream 52752 18597480 ~ 18597690 (-) True G101418
TU120094 lncRNA downstream 90828 18559319 ~ 18559614 (-) True G101409
TU120093 lncRNA downstream 95249 18554876 ~ 18555193 (-) True G101408
TU120091 lncRNA downstream 98239 18551917 ~ 18552203 (-) True G101406
TU120171 lncRNA upstream 21203 18673464 ~ 18676017 (-) True G101483
TU120157 lncRNA upstream 26470 18678731 ~ 18681725 (-) True G101469
TU120153 lncRNA upstream 55657 18707918 ~ 18732829 (-) True G101467
TU120154 lncRNA upstream 78239 18730500 ~ 18732829 (-) False G101467
TU120176 lncRNA upstream 93884 18746145 ~ 18746365 (-) True G101488
XM_026932720.2 mRNA downstream 126216 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA downstream 126216 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA downstream 140893 18282619 ~ 18509549 (-) False rasgrf1
XM_034305505.1 mRNA downstream 141042 18282619 ~ 18509400 (-) False rasgrf1
XM_034305504.1 mRNA downstream 163613 18282619 ~ 18486829 (-) False rasgrf1
XM_034305474.1 mRNA upstream 82166 18734427 ~ 18741724 (-) False znf710a
XM_026932413.2 mRNA upstream 82166 18734427 ~ 18741724 (-) False znf710a
XM_034305473.1 mRNA upstream 82166 18734427 ~ 18741724 (-) False znf710a
XM_026932412.2 mRNA upstream 82166 18734427 ~ 18741724 (-) True znf710a
XM_026913714.2 mRNA upstream 657627 19309888 ~ 19333430 (-) True dhx34
TU119855 other downstream 453636 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 563471 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 3295805 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 4303434 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 4861595 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 698501 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 1327808 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 2301341 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 2343080 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 3582442 22234703 ~ 22306769 (-) False si

Expression Profile