RNA id: TU120514


Basic Information

Item Value
RNA id TU120514
length 511
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G101809
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19252853 ~ 19253363 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaacaggccacatctggctGTTAAGCTGCTTattagtcaattgtccaattactattgagcctgtgaaaatagagggactttacctaaccactttccttctctttctgccgagctacactcctgagctgctggtgatccagacccccctacactctggaccagatgagcatcactcctgagctgctggtaatccagacctccccccccttcactctggacctgtccaccggcaatgcttcatactgccacgaaaacgcttcagctgttttccatggactacaccaacacacattgtgctcacacacacgcacactacagtgtaaacccatatgaggatgggttctctgttgagcctggttcctctcaaggtttcttcctatcaccatctcagggagtttttccttgccaccgtcgccctgcttgctcatcagagacgtcacacacacacacacttcactttacttttgtttgtgtaaagctgctttgagacaatgacctttgtaaaaaag

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120510 lncRNA downstream 11704 19240171 ~ 19241149 (-) True G101805
TU120451 lncRNA downstream 125494 19126638 ~ 19127359 (-) True G101750
TU120450 lncRNA downstream 127413 19123917 ~ 19125440 (-) True G101749
TU120440 lncRNA downstream 132687 19115606 ~ 19120166 (-) True G101745
TU120389 lncRNA downstream 306034 18946479 ~ 18946819 (-) True G101698
TU120553 lncRNA upstream 45528 19298891 ~ 19299362 (-) True G101846
TU120579 lncRNA upstream 107429 19360792 ~ 19361008 (-) True G101865
TU120585 lncRNA upstream 109209 19362572 ~ 19363809 (-) True LOC113526920
XR_003402820.2 lncRNA upstream 109325 19362688 ~ 19363800 (-) False LOC113526920
TU120659 lncRNA upstream 141708 19395071 ~ 19395304 (-) True G101932
XM_034305474.1 mRNA downstream 511129 18734427 ~ 18741724 (-) False znf710a
XM_026932413.2 mRNA downstream 511129 18734427 ~ 18741724 (-) False znf710a
XM_034305473.1 mRNA downstream 511129 18734427 ~ 18741724 (-) False znf710a
XM_026932412.2 mRNA downstream 511129 18734427 ~ 18741724 (-) True znf710a
XM_026932723.2 mRNA downstream 924795 18282619 ~ 18328058 (-) False rasgrf1
XM_026913714.2 mRNA upstream 56525 19309888 ~ 19333430 (-) True dhx34
XM_026913684.2 mRNA upstream 153687 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA upstream 153687 19407050 ~ 19496990 (-) False pik3c2a
XM_026913612.2 mRNA upstream 797969 20051332 ~ 20054436 (-) True LOC113526513
XM_026913745.2 mRNA upstream 961779 20215142 ~ 20292323 (-) True nectin1b
TU119855 other downstream 1056047 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 1165882 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 3898216 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 4905845 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 5464006 13788751 ~ 13788847 (-) True LOC113534839
XR_003402833.1 other upstream 97399 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 726706 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 1700239 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 1741978 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 2981340 22234703 ~ 22306769 (-) False si

Expression Profile