RNA id: TU121581


Basic Information

Item Value
RNA id TU121581
length 1615
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G102691
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21123315 ~ 21124955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACTTGAATTGTATCGTATAAATAGTTATACATTGTATGGATACTTATACATATATGGAATACTTAAATACATATTAACCCCTTAAATTCCCAGGACATGCCAGACAAACTTACAATGTTCACTATCGTAACTACATAACTCTCCTCTTAGTTTTGCGGGAATTACTAAATAATTGATAGCAGTTGCTGTATAATGTACTCTAAGATGAATTACAGAATAATAAGCCAGGAATTTAAGGGGTTACACACTATTCAACATGATCCAGTGAAAAAAAGACTACAAAAAGGACAAAACTTTCAATATTCATGGCAGTGATGAAATATCTATAAGAACACCACAAGCCTACACCTGTGACTGAAAAAGAAATCATGTATACATATTAGGAAAAGTATTCATAACGTGTGTGCCAGGAGGCTGCTAGGTAGGCAGCATTTTTTTGGCTACCTGGAGGAGCCCTTATTTAGGACCAAGCTGGTCCTAGGACCTTAGTTACCcatttcacactttttaaaCACCATATAGTGAGATCACAAACCATGATAAAAATGTTAGGCAATTATTAGGATATGAACATTTAATATCAGCAGGCGATCAGTTCAAGTCTCGAAAAATCTGACTGAAGGTTAACACGCATCAGTTAACATAATATCATTCCTTATTTTGTAACATTATACtattatacatttacaaaacaGTAATTTCCTGAAAATGTATGCATCAGGAGCACAGAGCTCTTGTGTAGGTTTCAAATACTGGGTAAAGTAGATTGATCAAAACCAAGtgatatctctctctcgctccatTCTCTCGCTCCATTCTCTCGCTCCATTCTCTCGCTCCATTCTCTCtcacacacacagccctggaAGACAATcttaaagaagaaataaataaatgataaagaaagaaatgaaataaggacgaaaaacaataagaaaaagaaagaaaaacagaccaaagctgagaaagagaaagaaaatgagaaagcaATACAAACTTAATGATACACCTCTTCATTCACACTAATTCACCTGAACAGCAGGTGCATGGTTGAGTGGGTGTGTCCACTTGCACATTAATTAAGCAGTATTTTAAGTCAGCCAGTTAGAAGCTGGTCTCATTCATATGTGGTTTAGGACTGGTGGGTGGTGGGGAAGAGGGGCTTTCTGGTTTAGGCCCTGCGTCAGGGGGTGTGGCTTCACCTACGGGCAACGCGGGTCCTCGTCGTGGAGATGTGGGTGTTTGTGATCTGATCGGGCTCAAACTTGATGAGGAGGCGTAGCTTGGGACAGAGGGGGCAGGTCGCCTGGATGCCGAAGATGATAAATGTGGTCTGAGGCCGAGACGAGCTTCTGTTCCTGCAATGTCTGAGATTTTGGCTCGTTCCTGACATCGTTCTACAAAACTGCCTCTCCGAGGGGCAAAGAggccatctctgtctctctctctgtccagaTGTCGCTCCCTCTCTCGTTCACTCGTGCTGCTGCTCAGAGAGCTCATGCTGAGGCCGAGATGAGGAGGAATATCACGTGCTCTTATAAACGCTTGCTGAGGTCGTGGAAGAGTGACGCCACGAACGCCGGACACACCAACACGAGCACTCTCACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121483 lncRNA downstream 119535 20995525 ~ 21003780 (-) True G102600
TU121291 lncRNA downstream 437130 20638871 ~ 20686185 (-) True G102458
TU121318 lncRNA downstream 542147 20578690 ~ 20581168 (-) True G102472
TU121286 lncRNA downstream 627014 20494257 ~ 20496301 (-) True G102453
TU121282 lncRNA downstream 644759 20478333 ~ 20478556 (-) True G102449
TU121721 lncRNA upstream 184348 21309303 ~ 21312468 (-) True G102809
TU121720 lncRNA upstream 193185 21318140 ~ 21319552 (-) True G102808
TU121921 lncRNA upstream 445476 21570431 ~ 21652774 (-) True G102983
TU122044 lncRNA upstream 670818 21795773 ~ 21796243 (-) True G103099
TU122103 lncRNA upstream 1098630 22223585 ~ 22224021 (-) True G103156
XM_026913450.2 mRNA downstream 102774 21013235 ~ 21020541 (-) True blvrb
XM_026913492.2 mRNA downstream 110215 21006447 ~ 21013100 (-) False sertad3
XM_026913491.2 mRNA downstream 112078 21006445 ~ 21011237 (-) True sertad3
XM_026913549.2 mRNA downstream 193365 20924978 ~ 20929950 (-) False LOC113526481
XM_026913548.2 mRNA downstream 193365 20924978 ~ 20929950 (-) True LOC113526481
XM_026914175.2 mRNA upstream 2993 21127948 ~ 21137281 (-) True esrrd
XM_026914172.2 mRNA upstream 24108 21149063 ~ 21249503 (-) True LOC113526809
XM_026914173.2 mRNA upstream 24108 21149063 ~ 21249502 (-) False LOC113526809
XM_034305501.1 mRNA upstream 343019 21467974 ~ 21492481 (-) False LOC113526680
XM_034305500.1 mRNA upstream 343019 21467974 ~ 21492481 (-) False LOC113526680
XR_004578325.1 other downstream 110215 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 156405 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 1143056 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1772372 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2926509 18187447 ~ 18196806 (-) True G101178
XR_004578321.1 other upstream 1109748 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 2465990 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 3498561 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 3627657 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 4260370 25385325 ~ 25548928 (-) False si:cabz01090165.1

Expression Profile