RNA id: TU121921


Basic Information

Item Value
RNA id TU121921
length 663
lncRNA type read_through
GC content 0.43
exon number 2
gene id G102983
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21570431 ~ 21652774 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAAAAAAGCAAACGTGGAGCCATTTTCCAAACTTTCGTGCACAAAAGTGAAGCATGAAGCATGGAATTGCGCAATCGAGCCGCAGTTTGGAAAGAACCGTGAATGCAAAACCTGCAattataagccccgcccccaaacaaGAGCACTCAGAATTGGTCGTGGGTGCGGACTTGAGTATTCGGACCAAGCGTGAGCCGCCCTAAGAGCCTAACCATTACGTACTTAGACGTGGGAGAATCTTAAAACAGCTGCACAAGCTGTATTTCTGGATTTAGGAACATGTTTGATGATTCAGAGTTGAATTCTTCAGCATCATGTCAGCAGACGTGTTTCTTGTATTGGTTTTGGCTCTTTATTCTGTGTGGAGCTGCTTAGAGGATGTTTTGTTTagattagcattagcaatgtAGTTCTCATTCAGTGGGAAAACTGGACCATTgatttgaaatatataaaaaaaaaaaaaacgctccgGTTCTCAGTTTCTGTCCAGGATTATTTTGGTGCTCAGTAGAAGCCGGCTACAGATGTGCACTCACAAGCTCAGTAACACCACATGTACACTCTGCCACAACAGCACAAGCACCTCAGCGGTCAGCTACTGAACAATCTTTAAACACTATCAccgtgattttttttcatttagcagTTTGTATTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121720 lncRNA downstream 250879 21318140 ~ 21319552 (-) True G102808
TU121721 lncRNA downstream 257963 21309303 ~ 21312468 (-) True G102809
TU121581 lncRNA downstream 445476 21123315 ~ 21124955 (-) True G102691
TU121483 lncRNA downstream 566651 20995525 ~ 21003780 (-) True G102600
TU121291 lncRNA downstream 884246 20638871 ~ 20686185 (-) True G102458
TU122044 lncRNA upstream 142999 21795773 ~ 21796243 (-) True G103099
TU122103 lncRNA upstream 570811 22223585 ~ 22224021 (-) True G103156
TU122105 lncRNA upstream 571555 22224329 ~ 22224564 (-) True G103158
TU122106 lncRNA upstream 574854 22227628 ~ 22227863 (-) True G103159
TU122108 lncRNA upstream 575611 22228385 ~ 22228716 (-) True G103161
XM_034305501.1 mRNA downstream 77950 21467974 ~ 21492481 (-) False LOC113526680
XM_034305500.1 mRNA downstream 77950 21467974 ~ 21492481 (-) False LOC113526680
XM_034305499.1 mRNA downstream 77950 21467974 ~ 21492481 (-) False LOC113526680
XM_034305498.1 mRNA downstream 77950 21467974 ~ 21492481 (-) True LOC113526680
XM_026914172.2 mRNA downstream 320928 21149063 ~ 21249503 (-) True LOC113526809
XM_034305154.1 mRNA upstream 578674 22231448 ~ 22306769 (-) True si
XM_026913500.2 mRNA upstream 683986 22336760 ~ 22341441 (-) True slitrk3a
XM_026914311.2 mRNA upstream 1497334 23150108 ~ 23153649 (-) True LOC113526884
XM_026914213.2 mRNA upstream 1505958 23158732 ~ 23162309 (-) True LOC113526825
XM_026914031.2 mRNA upstream 1644581 23297355 ~ 23299010 (-) True aamdc
XR_004578325.1 other downstream 557331 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 603521 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 1590172 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 2219488 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 3373625 18187447 ~ 18196806 (-) True G101178
XR_004578321.1 other upstream 581929 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 1938171 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 2970742 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 3099838 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 3732551 25385325 ~ 25548928 (-) False si:cabz01090165.1

Expression Profile