RNA id: TU122418


Basic Information

Item Value
RNA id TU122418
length 7857
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G103436
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 22928169 ~ 22936046 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggaaaattttttaatagttattGAACGTTCTACATCTTACAgtaaatattatacaattaCAAACTTGGCATAATtctgtcactgagatcactaattgatcttccaaaaaaaataaaatataaaaacccataaaaataataaaaacagatttacacTTCATATCACAGGCCTGAAACGGGTCTCGTCGCCTCATAAGAgcattcagttcagttttactGATAGGTATGTAAAACCTGCTACAAAACAGATGAGTATATAATGTATTACCGACATAATGATCAAAATGTTCTTATCCTTAGTGTGTATTTGGAAGACGGTGACTTTTCCCTTCAGTATTCAGTTTTAATAGCAAACGAAAACACAGCAGACTAGGTATATGCTGATAATCAGTTTGATAATAGATCAATAAATTTAAAGCATGTGATAGGTCTTGGACGCATTCAAATTTTGTCACTAGTCAGGAGGAGTCTGCCTAGGCTGTTAGTATTTTTGGGCAGTGTTTGTTCTCCTAAGATAAAATCTTATTTGGAAGGCAGACAAATAAGTTTccttgttttggaaaaaaaaatgaaggtgcATCACGTGTCcttttcagtgaaggaggcaatCCTATGATTCTGTTCTCTTAGTAAGAGGAAACATGAAATGATTGATATAACCTATAATTTTACTACATGCTATAGTGCCCAATCTATAACTAcgtttttattttgacattttcagtaCAGTATGAagaaagcaattttttttttgacttccagactttttttaatggaatgaTCCCCTTTTATGTTCTGGCATCTGATAATATAACAGTACCACAATTTTACTTGAAGCAGGCCGTTATAAAGACAGAAAAGCGACAGAGTGAACGAGAGGAAGAGACCGTTTCAGACCTGTGCTCTGAAATGTCCCTCACACGGTTACGCACCACACTCCTGATCATCTACTTAAGAATAAAAGGAACATCAATCATTAATAAAAACTTAAATAACACTTATGGTAGAAAGCGCAGTAATTACAGGTAAGTGTGGACTCGTTTACTTTCAAACCTAACCAACTTTCATTAGTGTAAAAATGTCAACAAAAACACTTCCAAATCCTACATTTTCGATTTGAGAGGTTCGACCTCTATCTCAGAAGCAACCTCAACCAGTGAACTGTTTAATAACTTTAAATTGCATTGATTGCATTAAGTCTTGCATTACAAATCTGATTTGTTCTAATTATATCAATATTTCACTGCCTGCCATAATACTGTTATTAAGActagatggatagacagattttaatattgaaaaggagaaagtgacagaaagaaagaccaAGGTctatctgaaatatttacagtgcCCTTCAGACATACTAGCCTTCAGaaaataagcaaacaaaatgATATGTATCTTGGTTCTGACAAAATCACTCATTagaactactttttaaaaatagtattcTCTCAAAAATATATGTGGCAAAATTAGTGACACCagaaggaatattttaaataaatgcaaacagtCTCAAAAACTTGGATCACTATGACTCTACGTctctacaagtgtctccaactttgtcagacattacaggaagagactcagtgctATTACTCTCTCCAGACAAGGTGTCACgaaatattaattgtaagggtgctaataattttgaaaccagtatTTTGCACCAATGAATAAAATGGTGtttctgaaaacaaaacatgttgaaataaaggatttgaactcacgatcTCTTGATGATAGCGTGGCGCTTTTGTGTTGCGCCACtctggggtgccaataattctggagggcactgtatATATGAAGTAATTAATACTAGGATTAAACTGCAACACGCTAGTGTTTAGGCcaaatttattttagaatagaaaaaaacacGATGCTTTTATCCACCTACTAAATATAGAGGATTCTAGATGGttctaatgcattttatttaaaagttaagAATTTCATATATCTGTGGTGGTATAAGAAAACTTGTCAGTTGGTGCTATTCACCAGTTGTCCCTATTCAATGGCAAATAGCCAAATAATGACAAcaaagattgttttttttttaatatcttacCAAGACTTTGCTTAAATAATATGCAAACATTCCTCACCAAatgccttttatttatttaccatctAAACCTGTCAGCTAGTGTTAGTAGCATTAGCATCTGCCTGTCGTCTCTCCTGTAGCTTAGCAAGGCTCATTCAGCAACTGTTTGTAAGATCACGGTAGTATAAACAGACAACTTGACTACCTAAGATAACAGAAAACCTAATGGCTGGATAATTACCTATACGTTGTTTGCTTAACTGGAAGGACATGGAGAAAACCGGATTTAATATGGTGCAAACAAGTATCATTTTTCACTACAATGAATTGTTTTTCCTGTCTGTGGTGGCACACGGGTTCATGTGATTGACAGACGTTATAcagagaaataatgaaacacaaacttttcattttaaaaggcTACAACCACTTTGACATTTGTGGGTAGGATGATTAGAAATCTGATTGGGTGAATGAACTTTATACAACCACAGTGGcaatgcatgtaatacattaccttgcataagtatttatcCCCCCCACCCATTTGTAATTATATGCCATCTACACAAAAGAGCCCATGCTACTGAAGCAGGAAAAACTGGTCAAGATTAAGGGCAAAATGGATAgagccaaatacagggcaattcGAGAAGAAAATGCTAGAGACTTGAGACTGGGGCAGAGGTTTAAcctccaacaggacaatgaacCTAAGCCTTCTGCCAAAACTACAGTGGAATGGTTCAGAACtaagaacctgaatgtgttagaatggcccagtcaagCCCAGACCTCAACCTTAATGTcccatccaatctgacagagtTTAAtcaattttgccaagaagaaagggCACGAACATCAGAATCCATTTGGGAAACACTGATCAAAACACACCCCAATAAACCTGCTGCTCTATTTGCAAccaaaggtggttctaccaagtactGACCAAGTGGGTGAATAATTCTGCAACCATCAAATAactgtattttcatttcacaaCCTTTGTgacacaataaaatattttgtacctTCAAATGTTAgatatattgtgtaaatcaaattgTAAAAGtcccaattaaatccatttcaattccaggttgtaatacTACAAAATGGGGTAAAATTCAAGGGGGTTAAATACTTGTGCAAGGCAGTATATACTTCGTCATTGAATGAAAACACAGATGTAAGTACTTTATACACGGGCATTCGAATACTCATCCACAtccctatatatatatgacatttatttatataaatgtcatATATGTATTTGCTTCCTAGTAACCTCAGTCTGAAACCGTTAACTTGCACAGAATATCCTCTCTTATGGAATGTTTAAATGCGCTaaccaacaacaaaacaaagacttttttttttaatttttacatttttgccaGTGAACACGCTTGACATGGCAGATGTTTAGTTATGATTGGGATactgtctcaaaaaaaaaaaaaaaataaaaattgcattctGGAGAATTCTTCTGAAGTAAAGGGTTTTCCTATGCTGCCACACGTGTATGAGGAAAAATGTGGAATTTTTGCAATCAAGTAGTTCAGTTTTAGTCTTGCAcaagttttcttcctctcactctctcctttaCGATAAAGGAATATTTCTCAAAGGCTCTGCTAAAAACTGAGCTCAAGAGCTGAAATCCGCCTGTGTCATTATGTTCCATAAAATCTCTGCGAGTCTTCATATTCAGATTAATATATTTCAAGTAGTGGTTGAGTAGcctaaatgataaatgtgtttacTGAGAATAATATTACTTCCATGACTAGGGATGTGCCGATAATCGATAATATGATAAACCACAATATTCAACACAGATAATCAATGCATTTCCATGCAACGTGACTACCAAGGTAGGCAGCATCTGCGTACTCCCGACATGAAGCCTGTCCTTTTCTTTGATTTAACGTGAGCCCAGCACTGCATACACCTTTCTTGGTGTaggcaatcccataattctgttcaccagaCCAGATTTCCATGAACGTTTCAACAAGCTGTCTCTGTGACTGCGGGGTAAGTTTACAAATTTTCATGTCTTTCTTTCATGTATTTCTGTTCATAGGTTGTCAGAACTCATTGTGTGGTTTTACAGTGATCTCAAAGCTCATGTAGCCACCATATGCAGCTAATTTGCAGTTTAGCCTTAGTTAGCTACCTATGTCAATCTGCTAACAATAATCTAGTTGCACTCATCACCAGAAAAGCAGCTGCTGCTTGTTTGAGATGTTGTTCTTGTTTGTCAGGTTTACTTCCTTAAAATGCTACCAAACAAGACACAAGTTCACTACTGTGGGAGACGCCTTCAGAACAGAAAGcagcaaaaaaatttaaaacatgctTCAGGATAGCGTCAGTGTCCCTGTTTTCCATTTAAGAACATGTGCGCTCCCCATAAGATCAATTTTCTCCCACGAAAGTCCTTCTGTtctatggaaaaacaaaaacatgcttgCCAAAGAGAAGATACaggaaacagttttttttatacacaatatGCAGGGTAGTATTTGTATAGGCTGCCCTAAAAGATCGTCATTCAGAAACTGAATATCGGCACATTCCTAATCAAGCCTAATGGGTACCATAGTATATACTTGTCTTCCTTTAGTAGATCATTAAATAGTGTGTACCGTATATTTGATTATTATGTATCTATGTGTCAATATGCTGATATTATTTCATAAAGTAACTGATATGTACTGTAGTGCGTTCATAGATTACAAGGGACTAGGATTCACAATATTCTCTCTTTCAATGCTGTTACACATCGAGGCAgtttttattattgcatttaaCAAATACTTCTCAAATCCGTGCAGCAAGGCCTCAGGGCCCGAGTGTTCACAGAGGACGAGGGGATTTCTCAAATAGCCATCTTTATGCCCTTTTTTCTATGTCCTACTTGTTCttaccctacattcacactaggaAGTGACAAAGCGAGCAGTCATTTCCCGTGGCAGCGCACAACTACAATTTCAACATGGACTGCCTGCACGAAGGAAGGTGCACCTTCGAGTCCATATACGGACATGCAGTGGGATCATATGAGGAAATATGAGTGGCTTGAAGGCCATGAAAATGTGgacaagtcactgagatcatatatGAAAATGGGAGTGGATTTGAGTGTTGCTGCGTTCCACTCAACTCTGAAGTAGGAATTATATCATTTTTGACCTTCGCACATTCGGGATACAAGGCAGAggaaaaaatcatattttgtttgctctgtccaAAACCTCATGAACTAATGaaaagctagccagctaacatcaGTGATAACTTTAATGTTCATGATGTATTTGCAGTACCTTCTCAAAACAACACTGGATGGCCAGTGTGATACAgttatgtctgtatgttgactgatctaaagcaaatacgaCTGTAATcgcatttaaaagtagagaagcgGTCCCTTATTTACTGGTGAGAGTGTGCAGAGCCATGTTGATGTgtcattttgtttggtttttctAGTCGGAGGTCAGAAATTCTGAAGGCCATAAATGGGAATGTGAGTGTGTCATTGAGTCCATTTATGAAGGTCTTCATATCAGAAGATGGAGGTCATTGGCAGTCACATATGCGCATGCATGCTCACAGGCtttgttagccagctagccatTATAAAATCCTCTCAGTTATCCTCTGAGAAATTTTTACTACTTTTGAGATTTATGATTATACATTTGAGTTTCtacaaaagaaaattaaattgtatttctGATGACTTGTATGGGCtaaaagacacacccatctgtcccacCTAAAGACCTGCCCATTGGTCTACATCCAGTATACAGACCCTGCTCTCCAATTCTGGCACAGTGACAATCAAAACATGAATTTCTCAACTCTCTATAATGTTGGATAGTCAATGTTTGATATTAACAATTTGTTAATGAGTGTCATTTAAAACAATAGAAATAGGaagatattaaattatatattttttaaaaaagcaaatggGTATCAGATTAACAATATCCTATAAAAAACACTTTCTACTGGAACACTAAAAAACTGTCGAGTGCATGCCAACAAGCCAAAAACTGGGCTAATAATTTGTCACCTTTTAATGTGAACGCAGGGTTATTCTACTACTTACCGCCATCATTACTGCTTTATTCAAAATGCTGAATAATGCATGATACAAATTCCTTTAAATCCATTTGGTAAATGCAAAAcacatcaacaaaacaaaaacgcaACAACAAATTCAGAACCACATAAATATCAGCTCAAAACATCAAGGGGAGATCATTACTGAACATCACAAACTTGTTGCTGAAAACACTGTTTAATGCAAAGTTACTTAAGTTACTATAGTGAGGAGTAATTCTTTCTTCTGAACAACCAGGCTTCCTCTaaggtatgtatgtatgtatgtatgtatgtatgtatttatttatttatttattgcatttgcaTACTCATTTTAAAGTTGACAGCATATCATATGAGAACACTTGGTAAAAATAAGTATGAACAAACGCATCAGTAGATTCATTTACTCTTGTATTTCCTCTTACTGTAAAAATCCAGCTCTCTGTTTTCTGCTGACTCTCAGAATGATGTGCGCTGTAGCCGACCAGCGACATGCATGTGATGTTCAAGAAGGACCTTCCCTTTAAGTAACGCTGATGAgatttctgatttgctgttgtgtttgctgattttctgttcagtttttggtttgttaatgttgttCATATTTACCGTCCACCATAATTTGGAGACCCTGAATATTAAATCAGGACCCTGTCGAACCCAGACGTCCTCTGTCTTGGCACGTATTCTGCACTAAGATGAAATCTGACCCCAATCCGTCATCCTAAGTGCCATTTTCACATCACTTGCCTCCACAGAGACTGTGTGTTGGCAGGTGTTTCAGCGTGTATGTGCAATTGCAAAAATAAGTATTTGCAAGAGCACATCTCTGCACATCACATGCATCTATAGAAATATATTATGCACGCCATAATTTAGAAGCTTACTCTATCCAGATGAtccaataaataaagaaaccagAGTCCTCTACTAAGTGAATAACTGAGATTAGTGTAAGCACTCGACATCCTAATGATGTTTGAACCATGTCGAGCTGCCCTACGCACTGCTAAACTTATTACaaatgtacctaataaactgctACAAGCTGGAAGACACCCTTGTTATCAATGCTAGAAAGATGAACAGAAGAAAGTTGTGTGAAATCAAAACTGAAAAGCAGAAACCCGTCTCAGCCCTTCTGAAAAGGGAATCTGAAAATTACAAATCTAcacaaatgtaaagaaaaaccctGCACTACTATCTAAACCTTATAATATTTGGCATGACAGACATGATGATGAGCATGGTGCAATGTACATTCCCACTCAAGGGTGGAAATatggaacaacaacaacaataacaacataaaaaagCACATTGTTTCAAAGTCGTAACTGGTCAAAATCATTCTGGAGTTTCTGCAGGAGTTGATTGTTAATTTAAATTgtcgatttaaaaaaaaaaaaaaatgcaacaacatAGGTCAGGAATAGTAAGACTAAAACACAagaggaaattaaataaaaaaaaaatagagggaaaaaattaaataaaaaaataaaaagcagctttTACAAAATGACGTAAGAATGCATAAAGTGacccttttttcttctgttctgGCAGACGTGGCTGCTGATCACAGAGAGCCCGTGTAACACTTGAGGATTTTGCATACGACGTTTAACTCCAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122387 lncRNA downstream 45016 22865924 ~ 22883153 (-) True G103410
TU122186 lncRNA downstream 591466 22335946 ~ 22336703 (-) True G103235
TU122108 lncRNA downstream 699453 22228385 ~ 22228716 (-) True G103161
TU122106 lncRNA downstream 700306 22227628 ~ 22227863 (-) True G103159
TU122105 lncRNA downstream 703605 22224329 ~ 22224564 (-) True G103158
TU122573 lncRNA upstream 282976 23219022 ~ 23259188 (-) True G103576
TU122600 lncRNA upstream 326761 23262807 ~ 23263083 (-) True G103600
TU122712 lncRNA upstream 334098 23270144 ~ 23275282 (-) True G103702
TU122733 lncRNA upstream 385617 23321663 ~ 23323412 (-) True G103719
TU122741 lncRNA upstream 393630 23329676 ~ 23330101 (-) True G103727
XM_026913500.2 mRNA downstream 586728 22336760 ~ 22341441 (-) True slitrk3a
XM_034305154.1 mRNA downstream 621400 22231448 ~ 22306769 (-) True si
XM_026913317.2 mRNA downstream 1263842 21641638 ~ 21664327 (-) True serpini1
XM_026913538.2 mRNA downstream 1293612 21623853 ~ 21634557 (-) False LOC113526476
XM_026914311.2 mRNA upstream 214062 23150108 ~ 23153649 (-) True LOC113526884
XM_026914213.2 mRNA upstream 222686 23158732 ~ 23162309 (-) True LOC113526825
XM_026914031.2 mRNA upstream 361309 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA upstream 361318 23297364 ~ 23298984 (-) False aamdc
XM_026913338.2 mRNA upstream 398131 23334177 ~ 23340381 (-) True aqp11
XR_004578321.1 other downstream 621400 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 1915069 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 1961259 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 2947910 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 3577226 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 654899 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1687470 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1816566 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 2449279 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 2449279 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00027211 True 5968 lncRNA 0.36 2 NC_007129.7 2935623 ~ 2941879 (-)
grasscarp (Ctenopharyngodon idella) TU424305 True 261 lncRNA 0.39 1 CI01000169 473647 ~ 473907 (-)
rainbow trout (Oncorhynchus mykiss) TU2207152 True 4203 lncRNA 0.44 4 NC_048588.1 40020748 ~ 40025121 (+)
tiger barb (Puntius tetrazona) TU188266 False 1827 TUCP 0.39 2 NC_056716.1 18777768 ~ 18841535 (+)
mexican tetra (Astyanax mexicanus) TU188266 True 363 TUCP 0.41 1 NC_035912.1 5276106 ~ 5276468 (-)
mexican tetra (Astyanax mexicanus) TU424305 True 502 lncRNA 0.37 2 NW_019172850.1 792844 ~ 848432 (+)