RNA id: TU122733


Basic Information

Item Value
RNA id TU122733
length 1730
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G103719
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23321663 ~ 23323412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAGTTTTTTGTTGACCATCACGTACAGATGCTCCTGTGGATAAGCACTCAGGTCTCGGGAGATGGCGTGCAGGCTGATGGAGGGATATTCCAGTGAAAAACCCATTCCTGAGCCATTGAACCACGACAGGCACCTGACAAGAAAGAATATTAATTCTGTTACTGGTTCTTATACTACTTTTAAAATTTCTCACTCCCATTCTACCGTTATTACAGCTAAAGTCAAACGGACACTCTCAAAAACCTAATTCACACAATGTTCTCCTTATCCTAAATAATCCTAGCCAAGACATGCTTGGTGTGGAACATCTGCTACTCTCATTTTGCACTGTGCTAACAAGTAAGGAAACATTATAATCCCCAGAATATCATTGTCCAAATCACGTCTAAAGCATCATACACTCACTTCAACAAACCCTATCGACTCTTCCAGTAATCTTACCCAAGGCAttttttccactgcacattcaaaaacaaaaacccaaacAGGAACCAACTGAACTAATGCagtaatgacaataaaagcaaGTGCATCATCATTACCTTCAAGTTGATAAGAGTTTCTGagaaattatatatttgtgtagGTTGGAAAGTAAAGTAGTGCAACACTGCCCacttttttatgtaaatgtttgctttctgtcattctgtgTTTGCGATGTAGCACATTGTGatattgtgccctgtgatgaattggcaccctgtccagcgtgtccccctgggataggctccaggcttcccacaaccatgtgtaggataagcggtacagagaatggatagatgaataataataataataataataataataataataatacactttcTGATTTCAGCTATTAAACAGATTCAGAGAGTGGCATAATGTTACACCCATAGTATACAACTATAAAATCGacatattctaatattttacaaaacatttaagGTGAGTGTGTAGTTTAGACCTTCAGCTGGCATGATGCTAATCTGGTGTCCATAAGCCTGCCTTgtttgttagcaacattagcttcATATCATCAGTGTAAACctgaagaagcaaacttcacaAGTGGAATAAATCTTGGCTGACTGACTACATTTGAGGTAAACtgtgtaaagtttatttttagtcaAACTATACCTTTAAAGAGCTATGTTAAGCTGGAGCCGAAGAACATTAATGCCTGTAGCAGACGTGtgtcattctcacacacactaacacacatacataataaacaacaataaagaaaacacacacacacacacacacagaataaaggCTAATGTTGCTGTTACTTACGATTCGGCCACATACAGCGTCCCTGTGCCGAGTCCCTTACCGTCTAAAACCGCTGTAGTCTCGGCCTGCTGATGCCGAACTCCCTCAGCAGGAGGAGGCAaactttttaacaaaaccataTTTTCACAAACTGACTAAAACACTTCACCTGTCACCTTATTTATTTCCTAAAGCTAGCTACCTCGCCTCAGTGGTCTCAGCGGCTAAACAACAACAAGATGCTAGCTAACAACAACAGAGCTGCTAGCCTGAAATAGCAACTGACGTATTTTTAGCTAAATATAAAAACGAAtacagcagctttacacaatAAACATTTGCACAGTATAGtgtaaactgattaaaaagcGAACAAACGCTTTGGAAACAAACTATTTTCTGCTTAAAGCACCACACTGGTACGCGTTACTTCGTCGTTTCCATGCGCGCCACATGAGCTCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122712 lncRNA downstream 46381 23270144 ~ 23275282 (-) True G103702
TU122600 lncRNA downstream 58580 23262807 ~ 23263083 (-) True G103600
TU122573 lncRNA downstream 62475 23219022 ~ 23259188 (-) True G103576
TU122418 lncRNA downstream 385617 22928169 ~ 22936046 (-) True G103436
TU122387 lncRNA downstream 438510 22865924 ~ 22883153 (-) True G103410
TU122741 lncRNA upstream 6264 23329676 ~ 23330101 (-) True G103727
TU122845 lncRNA upstream 188745 23512157 ~ 23513328 (-) True G103817
TU122848 lncRNA upstream 249177 23572589 ~ 23575679 (-) True G103820
TU123026 lncRNA upstream 325272 23648684 ~ 23699689 (-) False rnpepl1
TU123014 lncRNA upstream 409458 23732870 ~ 23738739 (-) True rpl35a
XM_026914031.2 mRNA downstream 22653 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA downstream 22679 23297364 ~ 23298984 (-) False aamdc
XM_026914213.2 mRNA downstream 159354 23158732 ~ 23162309 (-) True LOC113526825
XM_026914311.2 mRNA downstream 168014 23150108 ~ 23153649 (-) True LOC113526884
XM_026913500.2 mRNA downstream 980222 22336760 ~ 22341441 (-) True slitrk3a
XM_026913338.2 mRNA upstream 10765 23334177 ~ 23340381 (-) True aqp11
XM_034305528.1 mRNA upstream 132281 23455693 ~ 23504297 (-) False myo7aa
XM_034305527.1 mRNA upstream 132281 23455693 ~ 23498506 (-) False myo7aa
XM_034305526.1 mRNA upstream 132281 23455693 ~ 23498506 (-) True myo7aa
XM_026913998.2 mRNA upstream 189981 23513393 ~ 23535680 (-) True capn5a
XR_004578321.1 other downstream 1014894 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2308563 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2354753 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3341404 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 3970720 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 267533 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1300104 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1429200 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 2061913 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 2061913 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile