RNA id: TU123422


Basic Information

Item Value
RNA id TU123422
length 3682
lncRNA type sense_over
GC content 0.40
exon number 1
gene id sipa1l3
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24480302 ~ 24574675 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAGATCAAGATATTgtaatttaatgttataaaCACATCGGGGTGCTACCTGAACCAGACAGTATGTGACCCTCAGCTTAAACATTGTAGATGATCTTAAACGAATGGTTCAATGAAAGTAAATCAGCCAAGACAAGTTGtgcttttgtatttttcactaATGTAAAAATCAAGTGATGGATGTCACTTCCATatttcacccaaaatcttttccataaaCACATGCCCTTCTTCATATACTCATTGCAGATGTCATTAGGCCACGTGTAAATGTTCAGATAAAGGATTTTCTCTCAAATAGAAGACATAGTCAGTGCTTACACAGTTAAGACCAAAGTGGCTGAACTGGAAAACAGTGATTCTGGTTTTCCAGTGAGCTGCCCTcattgtttgatttatttttacagatttctgTAAGTGACACTATGTAGTGATACTGACCTTATACCTTGATTGACCTTGATTTCTcaattggtcagatggtgttgattaattttctataacagtagctctgacagtagtgctggctgaaAGGCACatgacagttttatattaatgtgctcattctaatacattatggtTTATCTTATAACAACTTACTGACAGACCTAAGGTGGACACTCCACCttaggaaaataggaaaaataatcagtgattgggGAAGTGATAGAATCATCATGCCACCTGGtcgttgattatcttcctataacagcacgtatATCGTGTtctatattttacataaattctGTCTAAATTTACTGCAGAACTTgatgcagggtttttttttgtttgttttgtttttttttaatctctcaatttgatcattttgccaattcccacccactagctagctctccccATCACTCCACAGCTACCAAAAAGAGAAGGTGAAGACATGAAGCCAgctgtcacagggcagctgagcattaggaggaaagcgctatctgccctcttccgcaaacatgagctcacagatgctcttAATCGTCTAGTGTCacggagagagagtatgccatccctctcaCCCGGACAGCATGACCAACTGTGCTCTCTCAAACTCCCAGTATACAGTTTGAGGcatatttatggaaagagtcttgGGTGAAAAAGACTTGCATTACTTGGTTGCAGTGTAagtccagtgcaaaactaaatatCTTTCGGCTGATCGGCTACATTTTTGCCGAACCATTCCTTTAATGACAGTCATATCTAAGCTAAGACATCATGACATCATGTACTGCAGGTCCTGTTCTCACAGTGCTGGTTTCTACGTTACCCAGGTGACATCCTTCTGTGCACCGTGGTTAGTGAGTATGGACAGAGTCAGTACTTCTGTTGTTCTTCATACAATATCTTCCCCATTAGTACTGCTTCTCAATGACTAGACGTGactgtagaaaaataatcagtcatCCCATCTCAGTCTCCAGTCATCCACGTGGTGTTCTGCAGGAATCAAACACGGAGACAGATCTCTTCTTAAAGCATCACCGCCGCTACTGTtaaacagagttactgtaaaACACAGGACCAATTAGAGCGACTGCTCCTAGAACTGTGATGCTCATCTCAATTTTCCCCTTCCAATGCTTTGGCATTGCACTGTGTGTAAACTCTGGCTTCTTCGTCGAATCGAGACACTGTACGTCTGTATGCAACTGAGACACAACAGCGCCTGCGCTTGTGAGGCACGGCGCCTTCCAcacataatatatttttctatttaccTCTCAGTTTAGGTGTATCAGGTGACACGACTGTTGGCTGTTTTTAAAACCAAGAACAAACAGATCCATGTATGGGTTATGTACTTATGCTGGTTTCCTCATCCCCTGCACTGTAAAGAGATTAGTCACCCTTCATGAGGCTTTTTTGTTAGTATTAGAGCAGTTTATACAGTTACAGTAACTAAATTAGCGAGTAGGTTTGATCCAGACCAGTTGCTCATTAGCTGTCGGTAGGTACTCTGTATATATGAGCTTTAATATGGCATAGTGAAACGACGCAACCCCGACTGTCCCTTTAATCTGGTCTAACTGGAAAacatcatctcatctctcagGAGCCACAACTCGCCCTCGACGGCCTGAactatttattctatttatttatgcgTCGACCAGAGGGTGGCGTTATGTTTTATATTCTATAACCAACTAATATGGATaaacacaccgacacacacacacacacacacctggagagAGCTGTTTAGACTGGAAAATTATCATACAACAGTtcaaggaaaaatccaccctgaacaactttATAACTAACCTAGCatctaagatttattttttaatgaaattcgGAGTTGcctttttcagtctgttttcatggtttcctacattacccacaatgctgttcaactGCCTGCTGattggtgcagtgggatttagccctatCTTCATCCCTACCTGAAAAGAtcgatgcagcagcactttaatcCTTTAGTCTATCCAGCTCAGAAAGATCGCCCtcgtcatctcatagatcaccAACTAGCCGAGGCAAGTCTCTGCTGTAGCTCAGCACGACtgtgtcatatagctgcattgcattctggaactttgagtccaacgttTGCACCAACATCTCCTCTACTTCTGCATTGGATATTCCATTAGTATGATCTCGAACATCTCTGGGAAAAGGTGACTAataaaagaagctcttgctcttttgtttttaggagctaacagtgaaacatgAACGTTCTCCCTTATGTGCTGAGAATTTGTTTTCTCTTATTAAACACCATTTTAAAGTGcactagcaataacaatgtctccctgtgacatcagcacggcacactaacttctcacaggaataaggaaaatacagcaccaaccatcAGATTAACAGCAGAATCACTGAACACATCActaaacaatataaacatatttaatgcgtttcagggtggaggtttCCGTTAAATCCTAGGCAATTTAAAGTTGCAACTGTATTTTggtgttcttttttaaatgcaactaaACTGCACCATTTCTAAATTTCTCATCATAgacaaaatatagaaatatgaaAGAGCCTGTTACTTGTGTAAAAATGCCCCCATTACTACTCTTTATCCTCGTCAGCCTTCTTCATCCTCACTAAACGCCAACATCAGGTCATCCTCTCCTCACCAGcttacacgtgtgtgtgtgctacatcaacacacactcacggcCTCATGCGAAGCTCTGCGTGCTGATTATACACACCATCAGCTGTCTTAATTCTTTAGTTTGTTCAAGGGTGGAGGTGTTTTTGATGTTTTCGtgttattttaacttttaagcTAAGTACAAGTGATCTACAGCTAGCTGAATCTGTGCACATGAATAAATCATTAAACTATAGTCCAGCTGTAAAACTTGCTGTGTCGTATGTGTAAAAATTtggattatttattttggatttttttttcttctctatctctttctctttggaCACATCAGCCatttttcagtgaaaaaaaaaggaattttggttgatttttttaagtCATACATGAGATGTTTGATTTCTGCTCTTTTGTACAATGCTcaatttcctcattttttttaatgatttgttttaatttttaattttcttcttgtATGCTGCCCTTCGCAGTTTGCTTTATGCCTCGTAAAATCCGATAACTGATTAATCTTTCAGTTTCTCCTGGGAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123411 lncRNA downstream 15813 24414900 ~ 24464578 (-) True G104291
TU123014 lncRNA downstream 741652 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA downstream 741652 23732870 ~ 23738739 (-) False rpl35a
TU123026 lncRNA downstream 780702 23648684 ~ 23699689 (-) False rnpepl1
TU122848 lncRNA downstream 904712 23572589 ~ 23575679 (-) True G103820
TU123452 lncRNA upstream 49665 24533737 ~ 24534419 (-) True G104320
TU123618 lncRNA upstream 147586 24631658 ~ 24661348 (-) False ttc9b
TU123851 lncRNA upstream 559714 25043786 ~ 25079487 (-) False tmem91
TU123870 lncRNA upstream 629905 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA upstream 662288 25146360 ~ 25151156 (-) True G104694
XM_026913860.2 mRNA downstream 2419 24469967 ~ 24477972 (-) True qpctla
XM_034305055.1 mRNA downstream 38777 24436290 ~ 24441614 (-) False tbcb
XM_026914089.2 mRNA downstream 38784 24436290 ~ 24441607 (-) True tbcb
XM_026914088.2 mRNA downstream 38786 24436290 ~ 24441605 (-) False tbcb
XM_026914334.2 mRNA downstream 47146 24427587 ~ 24433245 (-) False tmem123
XM_026913281.2 mRNA upstream 147567 24631639 ~ 24661978 (-) True ttc9b
XM_026914481.2 mRNA upstream 182989 24667061 ~ 24674856 (-) False c6h19orf47
XM_026914480.2 mRNA upstream 182989 24667061 ~ 24674841 (-) False c6h19orf47
XM_034305321.1 mRNA upstream 182989 24667061 ~ 24674707 (-) True c6h19orf47
XM_026914377.2 mRNA upstream 196695 24680767 ~ 24686249 (-) False fosb
XR_004578330.1 other downstream 869943 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2173622 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 3467291 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 3513481 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 4500132 19980069 ~ 19980259 (-) True LOC113527007
TU123617 other upstream 139444 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 268540 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 901253 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 901253 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 901253 25385325 ~ 25485121 (-) False si:cabz01090165.1

Expression Profile