RNA id: XM_026914350.2


Basic Information

Item Value
RNA id XM_026914350.2
length 3589
RNA type mRNA
GC content 0.45
exon number 4
gene id tmem91
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25043786 ~ 25079512 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggagagagagagagagagagagagggagagggagagatgacTGGAGAGGAGTGCGGTTAGAGAGCTGAGCGACAGAGAAGTGCTGAGCTGCGCTGGAGTTTGAAAGTCTTTGCGAAGAGACTTAAAACGGCAGCGGTGATATAAATACTGTGCGTTTAACCGGATTAAAGCCACAGCGCTTCTTCCCTCAGAAAGTCCGAGAGACTGGGCTGCGGAGAGGAGGAACCGCGCGCGCGCCAGCACAGCGTGACAGGAGGCTGGTGTGATTAGAGCTGTGAACTCAGAGTGGTGCGCTGAGACAAGAGCAGAAGTTCATCGGGTACGGCTTTGGATATCTTCCTGCCTTCTTCGACTGAAGCTCCGGCCAGGAcagcattaaaaatacatatccCAAAGGAAGATTCTGGcttcactgactcacacacacacacacaaataaatcaatacCCCCAAGCTGTGATTTCTTCATCACTTTTCCCTCCAGCAACACACTGAGTGGGTAGCGAAAAGACCGGCTGAGCAGATTCTATTTCTGGAGCACTGAAACACTGTCCGGACTGCAGAAATGTTTGTagagttcattttttttccaatagtGTGTCAGTTTTAGGACCCATTTttacttttccaaaaaaagagCAACATCTGCTTATCCAGTATGTATTTCCTTTAGCTTTCCTTCTTCTGATAGATCATTACTGTTTTTCTTGTCATCATCTACTTTGCATTTAAATCAGAGTCTAGTGTTCTGACCTCATTAGTATTTTACAATACGTTTAGATTAGCAGTGAGAACTGACAGACCTTCAGCAACGTTAGCAATTGgagctctttttctttttcccaccCTGACTGTAACACCATGCTAATCAAGGCATTCCATCACTACAATTGATTCCTACCTTTCTTTCCATGCAGTGCAAAGCTCATTAGCATATTTATAAGCCAGAGATTCATCCCATCATGTGAAACGTGAAATGTGACACTGACCACACGTTTGGCCCTTGTGGCCAGGAGCAGATAGCTTCTGACATGTGCAGAAAGTGAAGTGTGCAAGAGCCTGACAAGCTTATAAGCACAATAGAACCTGACGCAAGCTTGGAGcgaggaaaggaagaaaggaaaggaggGGAGGGCAGAATTCAGGCGCGCATCTTTATTTCCCACCCACAAGATGATTCATGCTTGTATGAAGCAgcaattaaaagaaatatattaaagatgGATTACTCACTCTAGAATAAAACAAAGAGGTGCACTCAACTCCGTCTGAGATATTCTCAACAGTCACATCCCCTAAAATCAGGATGGAGAGCCTGGATGAACTGGAGCACCCGCTTTTGGATGACAGCCCCACACACTCATCCAGAACGGGCAACAGCGGCCTCTTCAAGGGCATTTTTGTGAGATGCGAAGAGGAAAAAAGACCCCCCTCTCTAGCATGGAGGAGCTATTCTGGTCCTACAGATGTATCTCAGCAGCAGCTGCTGGATCCGTGTTCGCTCCCCAGCACACTTGAGTCCTTCTACACTCCTTCTGCTCCTGTCTGGGGCCCCGCAGACTCCCTGGGCCTGCACAGCAAGGAGTATCTGGAAACCACGTTCATGGACATCGGGCCTGGATCTCCTCTGGAGCGGAAGCTGCTGGCGGTAAGCAGAGACGTCCACAGCGTGTCCTACAGCATGGAGGACGAAGACGACCTGCTGCCAGACTTTGAGGATTCCTCCAGTGACGACTTCACTGACACGGAAAGCGAAAGCAACTTCCCGCTCATGATCCCGCAGGATCACCTCGGCCTGGCCTTCTTCTCCATGCTCTGCTGTTTCTGGCCTTTAGGCATCGCTGCCTTCTATCTGTCTCAGAAGACGAACAAAGCGTGGGCGCAGGGTGACTTCCAGGCAGCGAGCAAGGCGTCTCGTCACACTCTGTGGctctccatcatctccatcatcttcGGCATCATCACCTACATCTGCGCCGTCGCCGCGCTCATCTCCTACCTGTCCGGGAAGCCGCCTTAAAGTGTGCTCCGTGTCAGGCCCCTCCCCTTTTACAATGCTGTCCCCGCCTCCTGAAGACACAATGAAATTCTGTTCATACACTAATACAGATCTGTACCATGTATTAACACTGGGCTTTTATTCTAATTAACCTTCCCGGATCGAAACCGTCTGGACTTGTAGATGGATGGACGCTAATATGACAGATGGGAAATGGATCTCAGGACAAATCTAACAGAAGAAACACGTCTCATGATTTTGTTGGAACCCTTACAGCAGTGCAGCAATGGCACAATGCCATGGAGCAAAAACAGCTTGCGTAGATAAGAGTGCTGGCTCCTCCCGAATGATTTCTGAGACCTGAGGGTGTGTTTGAAGGACTTGACAAGGACTAAAAGAACAGACGTTTCTGCAGGTCGTGTTCCTCTTGCTCCTGAAAAAACACTGGCACAGTTTTAGAATTACTATATCCAGTAACATCTGGATACAATTTATGGGACTTGgctattcaaacacacacacatacacataaacttTGTGACAATAATTCTCTCCTGTCTcaaattcatttaaacattcatctttagtaagcgctttatcctggtcagggttgcggtggatccggagcctatcccaggaacaccgggCAAgcggcaggaatacaccctgagtGGGACGCCAATACACACGTACTCGCACTTTCTCAGTTTCTGAGAGAGTTGGAAAGCCTGAATTATGTGGCGGCCTtggaaaacctttcacatgaTCAAATTTTCTGCTGTATACATCCGAAAACTAcaggttttcctgaactgaaatatttttctctttttaatgcATCTCGAACAGCAGTAAAattctagcttttttttttttaaagctggtTACCCCCAAAATTGAAAATCaagatttaaagatttcattgtTCCACGTATTTCTGCATTTATAACCAAAACTACTtatgaaaaaacatttatttactcattttcacGAATTCtgtttacaatgggaaatgagttctcactttgagTATCAGCGTCATCCACatcatcagtctctgtctcatcagcTGAGGTGAAAGTCCCTCACAGCCTCATTGACGTCTCTTCACTCGACCCATCTCTGTTCACGCTAACGTTGAtgaggaaataatcactgaGTAATTCCGTCAATTCTGTTGAGTAAATATATTGTTCATATTgtctttttattaggtcatttaaagaTTTTGAAACTCTGTACAGAGCGTGTGagcactcttctctgttttgatgatgatgtcatggtgCAGGATGCATCATGGACATGCTGACGGTATCTGCTGTCTGAATCAAACTGAAATCATCaggcttatgtctgttttgCTATGACACATAGCAACATGATTAACACATGACACTGACTGTGTGGGGAAATCACACTTAACAACTAAGGTTTTAAGCAGACTAACTGCATTAACGCTGTAGTTGTTAAACTGGCTACTTACCCAAAATGATATTTGCAGGCAGAAACCCGAGGCTAGGTTAGAAAGtagtctaaataaaaacatttccacattattttggtaaaatatttttatagtcgatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123618 lncRNA downstream 383139 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 510068 24533737 ~ 24534419 (-) True G104320
TU123423 lncRNA downstream 560415 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA downstream 560415 24480391 ~ 24484072 (-) False sipa1l3
TU123411 lncRNA downstream 579909 24414900 ~ 24464578 (-) True G104291
TU123870 lncRNA upstream 34465 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA upstream 66848 25146360 ~ 25151156 (-) True G104694
XR_004578344.1 lncRNA upstream 112545 25192057 ~ 25214790 (-) True LOC117597583
TU123929 lncRNA upstream 159598 25239110 ~ 25241770 (-) True G104747
TU123932 lncRNA upstream 163960 25243472 ~ 25245244 (-) True G104750
XM_034305516.1 mRNA downstream 9605 25024817 ~ 25034882 (-) True bckdha
XM_026914366.2 mRNA downstream 267705 24767575 ~ 24776782 (-) True siae
XM_034305359.1 mRNA downstream 280326 24751653 ~ 24764161 (-) True clasrp
XM_026913845.2 mRNA downstream 280326 24751653 ~ 24764161 (-) False clasrp
XM_026913843.2 mRNA downstream 280327 24751653 ~ 24764160 (-) False clasrp
XM_026913560.2 mRNA upstream 26917 25106429 ~ 25135256 (-) True ppp1r13l
XM_034305165.1 mRNA upstream 26917 25106429 ~ 25134569 (-) False ppp1r13l
XM_026913563.2 mRNA upstream 75670 25155182 ~ 25182105 (-) True rasgrp4
XM_026913566.2 mRNA upstream 76641 25156153 ~ 25182107 (-) False rasgrp4
XM_026913565.2 mRNA upstream 76641 25156153 ~ 25182107 (-) False rasgrp4
XR_003402792.2 other downstream 281706 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 333119 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1434039 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2737718 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4031387 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 305813 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 305813 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 305813 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1159818 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1489573 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile