RNA id: TU123870


Basic Information

Item Value
RNA id TU123870
length 3940
lncRNA type sense_over
GC content 0.39
exon number 3
gene id G104694
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25113977 ~ 25151156 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGTCTGTATCCTCCTCCAGAGCCGCCACGGTTCTGATAGCCTCCTCGTGGACCTCCACGGTTGTCATAGCGCTGGAAGCTGCTGCTTTGGCCGCGGTAACCCGTCTGCCGGTTATCATAGCGTTTTTCAGGTGGAGGCGCAGCCCGCCGGCCCTCCTCGTTGTACTGCTTCACCAACTTCTCTGCCTCGTCTCTCTGCAGCTCAACGAAGGTCACCTCATCCAGGAAATCTCCAGACTCCGGCAGCACAAAGTTAGCTTCGAAAGGACACAGGGCCAGAAAGAAGAGGGAGGGAACATgggacacagacagagagaggaaagacagaaagagagaaaagaatagCAGAGAGGGGAGAAGAAATGGTGGGGACAGGTAGAGTCACACCACCAGGAGACAGAAAAATCTTAATTAATATCATGTAACTGCAGATATTTCACAAcaccttaaaaaaacaaaacaaaaaaaaaaaaaaaagggtgacAACACAAATCATGTAGAGATGAGACATAAACAATAAGACCTGGAGCAAACATGGCCTCCCAGAAAGGATGGGATTCAATACTTGCTCTAGTTTACATAGATAGGAAGAAGTGAAAACATCAATGATCCAAAAAGGCGAAGATTTTAGATTTAAGGGATGGCAGAAATGAACACTGCCGCTGCAAACCAAGAGTTAACTCAACGTCACGCTGAATATGAAAAAGTTGAATAAGCCAGGAAGATTGAGTTGAATATTTCAGTCAATTTGAAGCCAGAGAATGGTACTGATTAAGCCTTTCTTGATCATCTGCTCAGTTTGCAGTGCTTCAGCAGGAAGGGAGGATGGGGAGTAAGGGGTGGGCGATATAGCCAATATTTTAAACCACAATATTACAGACAGTAGTCATGTATGACTATATaaattttatagaaataaataatcatatataataaatgaaagatttGACTTAAATCAATTTAGTGCAGCCTAACAACCCTAAGGCATCACATACAAAGAGTATATAATTCTTCTATGTAAAGTTATCTACACTACAGATAAAATCAGGAAACATTCACAACAAAATCTATATTTGCAAGAATAGTGAACGTTCTTATTATCCTATTAAACAGTCTATATAATCCCTCTAAACCTTCTGTCGGCAgttctttttaaaacacaaaatggagCAATCACAGTTGTGTTGAAGCATTTCACTATTCACTACGCTCAATGCCAAAAGCACGAACCAGTCTTAAAGTTTTTGAAATGTCCTTTCTCTCCAAAGTTATGACCGTATGTTATGTAACGGGATAGTACGGCCCAAGTGAAGCGGACCCAGAAGTGGATTGTTTTTCCAGAACAGCGTGtgtaagtattttattcctctaccACATCGATTTGCCAGCGACTACAAATTTGtgctttattaatgaacatcattTTAACTGGTTATAGTTAGATTTATTGTTGTAGAAAGCCTTgaaaaacatgttagttcccCTTATCAATTACATCAATACCAGCTACAAATAGTCATTCTCTTACCaacctcttttttcctctctgccgCTTCAAGTTTTTAAGTCTTCAAATAagtcaaaacacacagcttgccatgttacagtCCCTATGAAAGGGTTCCTACtatgataaaatattagaacGAGTTCGTCTTTATAAACCTATCcattgaattacagccagaactgtcagagctgtgttgttttagaaaattaatcaacaccttcagattcaagaattcaactgcactgtggtataaaatgtttAGAGGCAAATACATTAGTTGCCTTTAGATACATGAGTTGCTCAAGCACAATAAAAACCGTTTATACTGGTATACCGCCCACCACTGATGGGGAGGGGTGAGgggaaattttttattattattttttttaaataaaataaaaaaaatcaaacttagGCCAAGGGCCTAACAGACAGAGTTCTTAGTTCAATGATGAAAGGGGTAGGGGGCATCGTCCAAGTTTgactacaaacaaaaatatacaaatagttGAGCAGAGATCTTGAATCTGTTTTAAAAGTGGTTTGCTTTTGTCCACTGCATTCCTACCTTTCATTTCTAAAACAGCATGATCGGGCACATCCTTCCCTTCCACATCAGTTTGCTTTAACGTTCGCTCTTTTAAGTCCTCGTCCGTGGGACAAATTACAATAGCCTTGCGTTGAAACCCTTCAAAGGGACGCATTTTTCGTCTCTGGGCTGATCCATATACATTTGTCTAGCAATGGTGACAAGAAAGAAGTAGAAGCTGTTCGTTATTGTTACTTTGTGTTCTGGTTTGGGCGACGCGAAGCCTGCAATGATGAAGTGAGAGTGGGGTTTTTCTTGACGAGCTACTGACAGCCTCTCACAACTCCCCCTACTTACCTTCCGTATCTGCTCATCTGCACCTACAACAGAGCTGTTAACAGGGACCCTTTCACAGTTCTAAGATGTAGCTTCAAGCACAGCTGAAGCTGAAATTATTACAGGAACAACCAAAATTTTCTTCACAGTACAAAATAGTTTAGCGCCACTTAGTGAATCTTACAGCACCTAAAGGATAACTATGTGCtaagattttaatttaacaatccTTGGAAAATTTAATCACGTGAGATTACTAAGGCTCTTGCTAAGCCTCAATTTAAATACTATTTACGTCattagttttgtttaaaatgtaacacaAATGTTTAACAAATTGCAAAGACTCTGAAATCAGAGGTTGTAAATGTTTCATCTTAAGCTTGATTTATATTTCTATGACGTGTATCTGCGAGCAGATGTTCACCTAGGTTTCTGCCAAAATCTTtccatgtaatgtaatgaactACGTGGCAGTGTCAAAACCACTAGAGATAAAAAGTAGGGAGAACTGATAAAAgaagtaaatgtaaacatgctgcacatgttttattttcaagcTTGAGTGGTCTGTCAGAAGTAAGAGACAGCACAAAGTCGGCCTAACAGATCCTTAGAGAGCACAGATGACCCTATTAGCTCGCAATTCTGAGGATCACAAATTTGTTTAACTTTCACCTAGATGAAGTCATAACATAAAGAGAcataaaagaaatgattttctgGCATAAACTAGTTTCTTTTTTGCAATACTGCATCCTTCCTCATTTGTGTTCAAATTCTGAATCAGCTTTTTCTTTAGCCAAAACATTACTGGCATTCGGTCTAAGAGTTTCTAGCAATTGAAAGAGAAATCAAATCAGTTTATTCCTTGTGTTCGTTAAAAGGAAAGAACTCTCTTAGTACTGATTAAATGccatatgtttatattttgtataatcTGCCTAAATGaggacattaaaaaatactgtggGTGGGTAGAAAAACAAACCACGGTTCTGGGATGGAAGGGTCGAAAAAAGTACCAATCCCTTGCTGACAttatccatcattttaatcaaagtaatatACACTTAAATAGCTAATATAAggtaccaactgaaaatataaacagcagGTCTGTAATCTCAGTAAGAGCTTCAGGTCTGTGttgaaaaacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacgcgttgGTAACTGTTTAGTGTCTGGTAGAATAGCAATTTCCAGATTAGTAACATGGTTTCTTGCCCTACAATTAACCTGCTAGTGGATatcaatccatttattattaggtgtCGTCTTTGTatgtgtgctttattttaagCTCATTGTCTTAATAGTGACAGAGCGTACTGACAATATGACGGTCTAGGACATGTGTCAAACACAAGGCCCGAGGGCCAAATCCGGCCCGCAGCCTCGTTTCATTTGGCCTGTGTGAAACAGCCCGCAGTAGGTCTACCCTAATGCGCAACATTTTCAGACTAGCTAGAATTCACAACAGATCTATCGTGCACTCTGGTTTCTATCGCGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123851 lncRNA downstream 34490 25043786 ~ 25079487 (-) False tmem91
TU123618 lncRNA downstream 452629 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 579558 24533737 ~ 24534419 (-) True G104320
TU123423 lncRNA downstream 629905 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA downstream 629905 24480391 ~ 24484072 (-) False sipa1l3
XR_004578344.1 lncRNA upstream 40901 25192057 ~ 25214790 (-) True LOC117597583
TU123929 lncRNA upstream 87954 25239110 ~ 25241770 (-) True G104747
TU123932 lncRNA upstream 92316 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA upstream 92316 25243472 ~ 25244017 (-) False G104750
TU124309 lncRNA upstream 682123 25833279 ~ 25836038 (-) True G105092
XM_026914350.2 mRNA downstream 34465 25044487 ~ 25079512 (-) False tmem91
XM_026914351.2 mRNA downstream 34465 25044487 ~ 25079512 (-) True tmem91
XM_026914352.2 mRNA downstream 35925 25044487 ~ 25078052 (-) False tmem91
XM_034305516.1 mRNA downstream 79095 25024817 ~ 25034882 (-) True bckdha
XM_026914366.2 mRNA downstream 337195 24767575 ~ 24776782 (-) True siae
XM_026913563.2 mRNA upstream 4026 25155182 ~ 25182105 (-) True rasgrp4
XM_026913566.2 mRNA upstream 4997 25156153 ~ 25182107 (-) False rasgrp4
XM_026913565.2 mRNA upstream 4997 25156153 ~ 25182107 (-) False rasgrp4
XM_026913564.2 mRNA upstream 4997 25156153 ~ 25182107 (-) False rasgrp4
XM_034305513.1 mRNA upstream 144302 25295458 ~ 25301413 (-) True LOC117597607
XR_003402792.2 other downstream 351196 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 402609 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1503529 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2807208 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4100877 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 234169 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 234169 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 234169 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1088174 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1417929 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile