Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU124615 |
| length | 1050 |
| RNA type | TUCP |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G105376 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 26239330 ~ 26241005 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0098827 | endoplasmic reticulum subcompartment | cellular_component |
| GO:0005787 | signal peptidase complex | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0042175 | nuclear outer membrane-endoplasmic reticulum membrane network | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU124447 | lncRNA | downstream | 151635 | 26087480 ~ 26087695 (-) | True | G105219 |
| TU124309 | lncRNA | downstream | 403292 | 25833279 ~ 25836038 (-) | True | G105092 |
| TU123932 | lncRNA | downstream | 994086 | 25243472 ~ 25245244 (-) | True | G104750 |
| TU123936 | lncRNA | downstream | 995313 | 25243472 ~ 25244017 (-) | False | G104750 |
| TU123929 | lncRNA | downstream | 997560 | 25239110 ~ 25241770 (-) | True | G104747 |
| TU124618 | lncRNA | upstream | 79027 | 26320032 ~ 26320770 (-) | True | G105379 |
| TU124743 | lncRNA | upstream | 341289 | 26582294 ~ 26608329 (-) | False | LOC113526510 |
| XR_004578318.1 | lncRNA | upstream | 356429 | 26597434 ~ 26608339 (-) | False | LOC113526510 |
| XR_004578319.1 | lncRNA | upstream | 357011 | 26598016 ~ 26608327 (-) | False | LOC113526510 |
| XR_004578317.1 | lncRNA | upstream | 357012 | 26598017 ~ 26608327 (-) | True | LOC113526510 |
| XM_026913764.2 | mRNA | downstream | 333990 | 25890299 ~ 25905340 (-) | True | loxl1 |
| XM_034305190.1 | mRNA | downstream | 369059 | 25839470 ~ 25870271 (-) | True | LOC113526366 |
| XM_026913264.2 | mRNA | downstream | 690402 | 25385325 ~ 25548928 (-) | False | si:cabz01090165.1 |
| XM_026913337.2 | mRNA | downstream | 892366 | 25344225 ~ 25346964 (-) | True | LOC113526369 |
| XM_034305278.1 | mRNA | downstream | 919637 | 25304736 ~ 25319693 (-) | False | LOC113526534 |
| XM_026913597.2 | mRNA | upstream | 83376 | 26324381 ~ 26464945 (-) | False | zgc:158464 |
| XM_026913596.2 | mRNA | upstream | 83376 | 26324381 ~ 26464944 (-) | True | zgc:158464 |
| XM_026913600.2 | mRNA | upstream | 83376 | 26324381 ~ 26464943 (-) | False | zgc:158464 |
| XM_026913601.2 | mRNA | upstream | 83376 | 26324381 ~ 26464938 (-) | False | zgc:158464 |
| XM_026913357.2 | mRNA | upstream | 274516 | 26515521 ~ 26532135 (-) | True | ube2q1 |
| XR_003402763.2 | other | downstream | 690402 | 25385325 ~ 25548928 (-) | False | si:cabz01090165.1 |
| XR_003402762.2 | other | downstream | 690402 | 25385325 ~ 25548928 (-) | True | si:cabz01090165.1 |
| XR_003402764.2 | other | downstream | 754209 | 25385325 ~ 25485121 (-) | False | si:cabz01090165.1 |
| XR_003402792.2 | other | downstream | 1476549 | 24752612 ~ 24762781 (-) | False | clasrp |
| TU123617 | other | downstream | 1527962 | 24623516 ~ 24711368 (-) | True | G104473 |
| TU124747 | other | upstream | 328080 | 26569085 ~ 26608329 (-) | False | LOC113526510 |
| TU125182 | other | upstream | 911307 | 27152312 ~ 27157140 (-) | False | si:dkey-151j17.4 |
| TU126682 | other | upstream | 3461147 | 29702152 ~ 29713992 (-) | False | hipk3b |
| TU127077 | other | upstream | 4102526 | 30343531 ~ 30344876 (-) | True | G107525 |
| TU127397 | other | upstream | 4488953 | 30729958 ~ 30732031 (-) | False | bbs10 |
