RNA id: TU125118


Basic Information

Item Value
RNA id TU125118
length 5872
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G105842
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27123277 ~ 27129172 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACACTCTTTGTCTACTTCACTTAAAACTATTCATATCATAACTCAAGACACATATTTACTAACAGTTTCCCTTCCCACACATAACTAATATAACTTCTCCTTTCTCTGCTATACCTGTGGTTTTCTGCTAATCACTTCTTATAGAACTGCTTCTTAAAAAGCAGcctttgtcacatatacattacggcacagtgaaattcattttctcacatatcccagcttgttaggaagttggggtcagagttAAGGGTCAGCCATGCTACGGCACCGCAGGAGCAGAGAGAGTTAAAgaccttgctcaaggacccaacagtggcagcttggcagtgtaggggcttgaacccccaaccttcatATCAGTAACCCAGACCATTAACTGTTGAGCATCCACTGTCCTTCGAATAAGAATTGCTATATCTCCTCTTTTAAACTGTCAGCTGTTATATATTTTAGCTTGTATACtttttttgtagtttattttatGCTCTGAAAGTGATCTTGGGTTTAtgaaaggcactatataaataaaatgtattttgttgtaataagtaatttaaataataaatgcattattattattattattattattattaaaaaacagcatgtcaAATTATCACTCCACCGTGGGTAACCCATGGTGGCATATGCAATTGGCACACTTTAGTATGGTATAATTTGTTATAATTTGCATGCACTTTTGGGCACTAGAACTAAGAAAAGAACACACCAATTAGATATTGCTCTGTTTATTAGGTCAAAAATATTAGACATGACAGGACAGAACTGTATGAATGCTGcacattaaaaaacatggcGGACTTGAAGTGCAGTGAACAACCTTGTCAGACGTGTCACAAGACCTACAGAGGACAAAATTAAGATATTACCAACCATTTCAAAACAGAACTTGAAGCAAACAGCTAAACAGTCCACCTTTTGATCAGCCCCAGAGAATTCTTAAGATGAAGCAATACCTACATGGAGTTGTCAGATTATTAGCTGCTTGTGCCTGGTAGTGTGTGTAAACCTCATAGCAAACCATAAATTATAAACACTACCACGTTAGATTCATTTGCATATCTGCCTGGTTATCATTTATGGTGGTTATCATTTTCCATTAAAGGACAGGACTAGAGAGGGGATTACATGGTATGCAATTACACATCAGTCAGTAactgtacactgtacaataATCTGGCAACTCAGTATACATGTCTTAAATGCCATggttaaaatattacaattactTGCTCAAAACTTTAGTACCAGACAGAAATTAGTAGCACACAACGTCCACTGCGATCACCGCATTTCACACAGAAAGACAGTGGATTGTGGACAGTCGAGAGCTTAGCTGCGATTACCAAATACAACAATGTTCAGGAGAAATGGGAACGGTCTTCAGTCTGAATTTTATACATTGATACCTTGAGGTTTTCCTCAATATATAAACAGTAGGCATTCTGATATGACTTTTTGTGGGGGAAAAATGCAGCAAACCATTTAAAACACTCTACTGTCAATATATTCCTGATCACAAATTTCTCATGTAGAAATGATTAAATGGTTCCACATGGGCAACATTTTTCACTGCTGATCTGCTGCTGCTCTTCCTCTTTCAAAGGTTTTTGATCAACTTTGAAATTGACTTggtattttctcactctttcttgcaaaaaattTTAGggccatcaaattgtaagggcatctcctgtgcacagcccacttcaggtcaccccacagatttttagttggattcaggtctgggctctggctaggccattcaaaaacattgatcttcttttggttaagccattcctttgttgatttggatatatcctttgggtcattgtcacgttaaaaggggaaattccttttcatcttcagcctactagcagacacctgaaggttttgcactaaaattgactggtatttgtagctattcatgattcgctccaccttgataaaagcctcagttctggctgaagaaaagtagccttaaagcatgatgctgccaccaccatgcttcaccatgggtatggtgttcttttggtggtgtgctttttttgttgcaccaaacaaaccttttggaattatggaattattatgcCTTTTGGACATGCCTGGTCTCTTCATACTAtaacattttgccacatagtcTGGGGTGATTTATTTgagcttgaattttttttttttgtgagaaagggcttccttCTAGCCAACCTactccatagcccagacatgtgaagaatatgagggactgttgtcacatgcagagagtaatcattacttgtcagatattcctgcagcccctttaatgttgccgtaggtgtcttggcagcctccctggtaagtttttgtcttgtccttttataaatttcgGAGggacttcctgttcttggtgatgtcacaggggtgctccattttctccacttgttgatgatggccttcacggtgttccatggtacatctaatgttttggaaatattttgtacctctctcctgatcgatatctTTCAACAGTGGGACACTGTACAGGCTCtataagctctttgcagaccatggcttcagaagtcaaaaagatgtgaagaaaatcctacagaaacagctgtttttttatttggtgttaatcagaataattttattgatgacagccgtatgataattatttttgatCATGAGATTCAAAGTGATGCAGACTTTTTCTATCCACTgtatttaacaaatattaacTATACATATCTAATGTCAGCTAAGCAGGCATATGATAGATTCATATGTCGAGTGGCTCACctgctgtttttaattaaagagaaaaaaaagatgattacTCTTTTGCTCGTATTTTGAGTGATACCTTGTACGAgcgtactctgatgttaaaatgcagtgctcctacacaaaatgtgcACAGGTTGGGAGGTCTGAACTCTGAGCTCTCAGTAAACAATGCTGAGGTTCATGCTGCTCCAGAGAGCAAGCTAGCATGCTGTCAATGAGGAGAGTCTGTGGAGGCTTAATAGCAGTGCTGAATTTTCCAATTTGTCGAATTTGTCCAATATTTGTTGCAACCTTATTCCTAACACTGAGGAAAATTCCATGAGAGtgtcaaaatgtaaaattaaagacCAGGccaaatggttaaaaaatgcAGTTGTATTCAGGCAACAGTGTtcaaaagacaagacaaaacaacTCTCTAATGACACTTCATAATGCACCTGGTTAAGCTTTATCGATGCCCAGTTCCTCTGGGGTTGAGATGCCCAGCTCCACAAGGGTGGGGCGAAGCTCTTGAATCACATATGGATAGATCTCTTTATGTGGTCCAGACTTATCCTGAGAAGATGATTAATATGacaagttgtgagtggggagacagaaaaacatatgCTTTGGAATATATAAAGCTCAAAGTGTATTTCCATCCAATACATATGAACACTGTATTACTCAGATCTTAATCACAATCTGCCCTCAATGTACTAAAGTACTATAACAGTTCTTGTAAATACTAACGTCCCAATATACTGCGGCTGGACAAAATATGACAAAGCTTTAACAGTATATTAATATCAAAGACCTAATAAGGAGTGCCTTCAGAACAGCTTTAATTCTTCTCTGAATGCTGTCAATTAAGTCCTGAGTGGTTTGTGGTAGGATGCTAAGCCAATcttcaaaaagaaaatcttccagttctttcaaagataaaacaGATTGACTGTTTCGCATTCTGTGCTCAAGAACTCCCCATAAACGTTCAATAATGTTTAAATTTGGTGACTGGGGAGGTCACGGAAGGTGCTTGACTTCATCCTGGTGTTCATTAACCACTCTTGAATAATTTTCGCAGTATGAATAGGTGCATCATCATCCTGGAAATTGTGTTTGCAACATAGGATGCACCTGCtcctataaaatataaaatgtttggtGGCTACAAGCATGCAAAGCAATCGTGGATCTAATGATTTCTGCAAGAAGGCTGTCTATACTATTATGGATCTCCCACCAGACAAAGTCATCATgaaagctgtgatttgattctgaaTGTCGACGTACACAAAACTGAGTGACAACCTGCTGAAGCGCTTGACTGATTTACAATAGTATACAAGATATGCCATACCTCCGCTGATTCTAAACAAACCTTACAATAGCTCAACAAACTAGCTAAATACAGAGAGCAGTGAAAAGTTTAACAAGAAACTTTTTTTGTCAACTGTGGAAGATTTCTCTTGCTGCCTTCACCTGCACCTCTCGACATCTGAACAGCTGTGATGTTACATTCTCCAGTAATTTATGGCTTGTATCTTGTCCATTGTATCACATCAATAAGAGATGCACAAACCCACCTTTACTGCCTCTAAAATGCGGACTGCACTGGCCAAGTCATTCAGCCTTCTGCAGGCTCTCAGTGCAGAGTCGAGGATCTTAGGTTCAGGGACCAGGTCATAGCCGATCAGAGTGTTCACACCTAAAGATGAATTGTTtcaaagagagaggaaaaaaaaaaaaggtgcaaaagGCTTTAAAAGGCataattttacacaattttgaAAATGCATACATAACGCATGGGTACAATTAAAGAATTGTGGATAATGGTGTAATGGATTGAATTGTTGATAGGCTAATTATTTTTTGAATAGCTAGTAAATACTTGCTTTTACAAAGTGATTGAGCAATGTCTTAACTAAACATTGCATCAGACCATATCACACCACGCCATTGTGGATATTTTGTTCTAACAGCATGCCTATCATGTTTTactccacttataccacagcaattagtcAATGAACAATCagtctttttaaccatttacagttaatgttgtggaacatccgtgagaCAACTTAggtcctgttattacttactttatagcagctacaatctgtcccttaccagcctctatttttttctctcttgaagttaatgcaTCTTGTTATAGAAAAGAGCAAGAAACCCAAAAGCACAgagtcttctgtcctgaagactttgccgtggtggaaaacttattAACCGTTACAACCTTTCACACCGGagactcgttctaatacattattattactatagtaacaactaagtTATAGGAACGTGTACGGTCAATacgtctttcttttttaaaaaggaagactttacagaaaacttcataacAATTacaccactttttaaaaaagaaaaacgtactggccatacaagtccttataagttagttgttactatagaaataataacatattagaacgagtgcattagtGTAAAACTATGATTTGTgttacagccagcactattgtcaaagctgctggtagagaaaattaatcaacacctactgaccaatcagatttgagaattcaagagcgcagtgacacacactgaccatccgctttaataggaacacctgtacattcgtGCTTTGATctaaatcagccaatcatgtggcagcagcacaatgcgtaaaatcatacagatacaggtcaagagcttcagttcacatcaaacattagaaagGGAGAAACTAGTGATctctgtggcatggttgttggagCCAGATTGGCTGAGTTGAGTATCTCATAACctgctcatctcctgggattttcacaaacaacagtctctagtattacacagaatggtgcacaaaacaaaaaccagtgAGGGAAAaacagttctgtgtgtggaaattCCTTGTCgataagagaagtcagaggaaaatggccagactggtttgagctgccaggaaagatatagtaactcatataatcattctttacaaccgtggtgagcagaaaagcatctcagcatgcacaaaacaatgaaccatgaggtggatgggctataaTGACAGAAGACCACATAACATTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125109 lncRNA downstream 15706 27105368 ~ 27107571 (-) True G105835
TU124929 lncRNA downstream 247443 26875595 ~ 26875834 (-) True G105666
TU124902 lncRNA downstream 303560 26819466 ~ 26819717 (-) True G105639
TU124897 lncRNA downstream 334421 26787940 ~ 26788856 (-) True G105634
TU124872 lncRNA downstream 376938 26746119 ~ 26746339 (-) True G105611
XR_004578372.1 lncRNA upstream 14535 27143707 ~ 27144874 (-) True LOC117597606
XR_003402778.1 lncRNA upstream 59170 27188342 ~ 27188792 (-) True LOC113526487
TU125590 lncRNA upstream 649960 27779132 ~ 27781800 (-) True G106193
TU125592 lncRNA upstream 732668 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 815644 27944816 ~ 27945033 (-) True G106258
XM_026913390.2 mRNA downstream 275314 26827024 ~ 26847963 (-) True pkma
XM_026913391.2 mRNA downstream 275314 26827024 ~ 26847963 (-) False pkma
XM_026913543.2 mRNA downstream 431542 26680356 ~ 26691735 (-) False rec114
XM_034304982.1 mRNA upstream 2957 27132129 ~ 27138338 (-) True LOC113526953
XM_034305079.1 mRNA upstream 9075 27138247 ~ 27143595 (-) True LOC117597534
XM_034304983.1 mRNA upstream 15716 27144888 ~ 27160099 (-) True si:dkey-151j17.4
XM_034304984.1 mRNA upstream 46095 27175267 ~ 27186037 (-) True LOC113526685
XM_026913304.2 mRNA upstream 64747 27193919 ~ 27202055 (-) True LOC113526349
TU124747 other downstream 514948 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 882272 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 1574349 25385325 ~ 25548928 (-) False si:cabz01090165.1
TU125182 other upstream 23140 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 2572980 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3214359 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3600786 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3687407 30816579 ~ 30819614 (-) True G107803

Expression Profile