RNA id: TU125590


Basic Information

Item Value
RNA id TU125590
length 2647
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G106193
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27779132 ~ 27781800 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTTATTAAAAGTAAGTCACGTATCATAGAGTACAAATTTCAGAGTTGCTTTGAATGTTAACTGAATTCTTGCAGTTTTTCTGCTGTGCTTTTATTCTGCCCATGGccttatttactgtatattttctgtttaatttatgtattgCTACATCCACTGGTCCTTTTCTAGTCACTTTTAAGGCCTTGGCTGAATTTGACTGAACTTTGCCCAAATTTCCCACAGTCCATCCTGCAGCCTTGAAATGTGTGCCAGACCTCGCTTCAGCAGTTCACTCCGTGCTCACGGTGAGAGGACATGGCACTTTGTAAAGTGAgctcatttatttttccttattcACATGATATAGTACAGAGTTTATAAAAAATGAGCTCCATTCCTCTGCATAATTCATCAGAAAATGGTCTTTTGCAGTGTAAGGTTTTTTATACTGACCCTGGGAACTGCTATCCATATTTAAGAATACAGGAGGTTGCTGTAGGACTGGGGATGTGACAAATTTATATGAATATCATCATAGATTATTTGTGATGCACTTTCCTAAGAGTATTTTGTGTGTTCTCAAACGTTCAGTGGCCGCTTTTAAACTCACTGAATTCTAGATTACTTTTCATGTACATTCACTTTTTTCTCCTTGTTTAACACCCACTCTTTTTCCCCGAATATATggtgaacaaatgaaaaacagacaaatttgTCTTTAGAAATGTACCAACAGGGGGTCCGAAAGTCTGAGATCACTAGCAAAAATGCTTcaattttgcattcttttctgaTTTACTACAAaccatttcattacaaatgatcaGCAACAccctgagtgaaaagtagaatcttagaaatatttacatgaatttcagagtttctgaaaaatgttcaaatgtttatttccaattttatattttaataagtttttcagtttgagtttttcaatttcagattttcaatgtggtctcagacgtTCTTACCTCACTGTATATTCACTGAAGAACAGCTAAAGAcagtattatttaaattatttagagACGTAAAGCAGAAAAGTTGGCGATAAACTCCAATCCACATCATTCAATCAGTCAGGGTCGCTGTAGATCCAGCGTCTATCCCAGAAACACCCTGAATAAGACGCTGGTCTATCacagggcaacacacacacacacacacacacacacaagttctcacacacactcatagccAATCCACCGGGATGTTTCTATGAACTACGAGagagaaataatataaaattgtagCATACAACAATATAATATTACAACACCGGTGATGACTGCGACTGCAGGGGTTAAATGTAATGCTGCTGGTTTGCGGTCACGTGGTTAGCATATCACATATTCGTTAAAGGTTTTTCCCTCTTCACCCACCTTAAATTTGGTCTTCACTGGAATTCCACAGTGGATCTTTCAGTAGAAATCTCCATTATGCATCTGGAATAATTACTGAATCTGTAGCTTTTCTCAGAGGGTAAGAACACTGGAAACACGGAGTAGCATGTGCAATAATGTTTAGTAAAAAGTTCATCACTGAGACGTTTAGAGAATTTTAGATGAGCACGGCGTCCTTTCCTCAATAAGGCTTGATTAAATATATAAGAATCTGCTGATTTGTATAAAGATGATGATAAATAGCAGGAACTCTGCTAACTGCATATCACTACATGGAACATATTCAACATTTTAACTGAAGGTATTTTGAGCAGTAATTATATTCTGATCTCATGCACAGTAAAACCTGCATTTATCTCCTGGACTGCTTTTTCCTGGGTTGCTGAGACACACAGTTTATTCCTTTATCATCTTCTTTTCATTTAGAACCAGCTAGAGGCTTATTGTTGAGATGACtttatggaaataaatacagaaGGGTTCTAAGGGAGGTTTTGTTTTGGAAGTATTTCCCCTGTGATTTGGACAATGTTGATGGTATTCTGTAAATAGTAGAGCTAGATGGTcccatttttgttgattttagtTTGGATTGCGAAGTCTTATGACTGTACATCCCTATATTTGTAGATAAATGTCCTTGCTAAATTGTAAATATAGGTCATGAATGTATGGcaagatttttctttctttctccctaaATTCGACAGTACAACttattgaaaatatttcttAGTCAAAACCGATTCTATTATTTAGTCTTttacttggatttttttttctcaagccTGTGTAGATGGACTCGTGACACAGACTGCACTTTTGCTtcgtgtgtttattttaaaactgtgcaATGAAAGACTGATGgatacatgtgtttttttttttttttttaatggacaaGAAACATAAGCAAGAATGTGAtctaagtaataaaaatgaaggaaGGTACAGTCCAAGGTTTGTGACGAAGAGGTACAGACTGAAACCCAAACTGGAaaccccacagattttttttttttctgctcctttGCAATGACTGAAACCAaatttgtttcactttttttttttttttttttggtactgtCTGTAGAATATTACTCAGAATTGCTTACAACATGGACTAAACCATCTTGTAAAAAGCTCTGGCTGTGACATTTTCTGCCATGTAATATGGAGATGTAACAAACTGAAcagatggtggatttttttaaatgtctgtacAGATTATGATTTGTGAGTTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402778.1 lncRNA downstream 590340 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 634258 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 649960 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 671561 27105368 ~ 27107571 (-) True G105835
TU124929 lncRNA downstream 903298 26875595 ~ 26875834 (-) True G105666
TU125592 lncRNA upstream 80040 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 163016 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 171718 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 172464 27954264 ~ 27954479 (-) True G106260
TU125666 lncRNA upstream 181971 27963771 ~ 27964010 (-) True G106264
XM_026913635.2 mRNA downstream 10329 27734339 ~ 27768803 (-) True si:ch73-386h18.1
XM_034304991.1 mRNA downstream 70361 27662408 ~ 27708771 (-) True otogl
XM_026914021.2 mRNA downstream 120295 27602226 ~ 27658837 (-) False ptprq
XM_026914020.2 mRNA downstream 120295 27602226 ~ 27658837 (-) False ptprq
XM_026914019.2 mRNA downstream 120295 27602226 ~ 27658837 (-) False ptprq
XM_026913966.2 mRNA upstream 21 27781821 ~ 27823226 (-) True glg1b
XM_026913968.2 mRNA upstream 21 27781821 ~ 27823225 (-) False glg1b
XM_026914381.2 mRNA upstream 43524 27825324 ~ 27846822 (-) False wdr59
XM_034305151.1 mRNA upstream 43524 27825324 ~ 27846822 (-) True wdr59
XM_026914111.2 mRNA upstream 73036 27854836 ~ 27859361 (-) True cog8
TU125182 other downstream 621992 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1170803 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1538127 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2230204 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1920352 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2561731 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2948158 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3034779 30816579 ~ 30819614 (-) True G107803

Expression Profile