RNA id: TU125592


Basic Information

Item Value
RNA id TU125592
length 1772
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G106195
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27861840 ~ 27905029 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

accTGTGTTGAATCTGAATGGCAATggaggaaatgagagaaaaaaaaggaaggaaataagagagaaaatgaaataacataaaaaagaaggaaagaaagacaatgaAGGAGGGAACGAGGATGGAAAGAAAAAGCAATGGAgcaaggatggatggatggatggatggatggatggatggatatgaTGAATTTGAATGCACTGACAATGTGCTATAATGTTACCTGGATCCTGGGATTACAGCATATAATCAATGATTTTCTTAAGCACAACTTAACCAAattcattattgtttatttatcatcacTTGATCGAGTAAACAATTTCACATTTCCTGAAAttgtacatacacatacagtgtatgtgtgtgtttggtgaaaaCCCTTTATActgtgacatttacattttttatacaactgCATATAGTTCTGAGAATAAACTACAcgttttcctgaactgaaatatgtttctcaaCTACAGATCAAGTTCCTGCATTTGAAATTCTGATTTCCGCTgaactggaatgaaatctttaccttacattttacatttaaaatgtaaagaacaGCTTTATTTGTAACTGAGTTCCTTGTAAAAGAGAAACAGTTCAGGAAAGCGTAAAGTTCTCACTGTAAAGTTTGCACTGTGTATATAAGCAGAAAATGTCCAAATGTGAAGACGTGAAGGGTTTTTGAAAGCCACCACACATTTAAAGAAGAAAACCAATTTTGGCCCCTTTTTTGGCCCGAATTGAGAGCTTGTACATGTATGTATTTGGAGTCTGTATAGCCGAGAGCCAGTCGGTCACTTTGCACTTTTCTCCAGCAGTGAGCTGTTGAAAGATCATCACTGACAAATGACTGAAAAGACACAatgtccattaaaaaaaaaaccagtccAATCTGAGATGCAGGAGTGTGTTAGGTGAGTGTGTCCTCGTTTCTGATGTACTCTCCCACATCAGCCTGGTGAAACACCACAATGGCCATGGGATCCACTTTGCGGCATTCCTGTGTGGTTTTCGCTGCCACTCCAAAACCCTTGGTACGTCTGCCATCGAGTAAACCACCACTCCTTGGTACTGAGCCGTGTTTTCTGTAATCCTGCCCAGGCCGGACTTCATGATGTGGTTGCCGTACAGGAAAGACTGCTCAGCTCCAGGCTTCACCCACACTTTATACTGTACAGAAGACACGTGAAGCAGCGTGAGGCTCAACGTACAGCTGGGAAACATGATGATGTGATACTCAGCATTACGGATGCACtgatgccatttttttccccaggccGAGTACAAGTATGTTTTTAAGTTCTCGTCGAGACTGATATTAAAACTGGAGTAATCTCCAGTAACCCACAGGCGCATGGACGCTTGTCTACGTAAAGATGcagacactagaaaagttttCCATGCACACTTTCGTCTGTTTGCGTAAAGATGcagacactagaaaagttttccatgcacactttctttcttcctgttgtAGGAAGATGTTACAGCAATTAACAAGagagtgtgcatgtaaacttttctacaGCTTAACTGAAACAGATTACTGtggtggttaccgtaaaaccctgtatatacacGCACTCCAGATTTTACCGCAACAGACTCGCGTAGTCTGAACTAGTTTGAACGGGACTAAGGAgagcaaacagcatttttaaatcGCTTTCTAATGATCATCACCATTAAAATGGTTTGTAAAGTTTTGATTTGACACTTCATTgtagacatttttgttttcagtcaAAATTTTTGCCTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125590 lncRNA downstream 80040 27779132 ~ 27781800 (-) True G106193
XR_003402778.1 lncRNA downstream 673048 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 716966 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 732668 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 754269 27105368 ~ 27107571 (-) True G105835
TU125660 lncRNA upstream 39787 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 48489 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 49235 27954264 ~ 27954479 (-) True G106260
TU125666 lncRNA upstream 58742 27963771 ~ 27964010 (-) True G106264
TU125667 lncRNA upstream 60034 27965063 ~ 27966251 (-) True G106265
XM_026914111.2 mRNA downstream 2479 27854836 ~ 27859361 (-) True cog8
XM_026914381.2 mRNA downstream 15018 27825324 ~ 27846822 (-) False wdr59
XM_034305151.1 mRNA downstream 15018 27825324 ~ 27846822 (-) True wdr59
XM_026913966.2 mRNA downstream 38614 27781821 ~ 27823226 (-) True glg1b
XM_026913968.2 mRNA downstream 38615 27781821 ~ 27823225 (-) False glg1b
XM_026914328.2 mRNA upstream 20861 27925890 ~ 27939822 (-) True LOC113526894
XM_026913729.2 mRNA upstream 278504 28183533 ~ 28205626 (-) False LOC113526564
XM_026913728.2 mRNA upstream 278504 28183533 ~ 28205624 (-) True LOC113526564
XM_026913722.2 mRNA upstream 324409 28229438 ~ 28233387 (-) True foxf1
XM_026914417.2 mRNA upstream 510106 28415135 ~ 28422985 (-) True irf8
TU125182 other downstream 704700 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1253511 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1620835 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2312912 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1797123 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2438502 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2824929 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2911550 30816579 ~ 30819614 (-) True G107803

Expression Profile