RNA id: TU125661


Basic Information

Item Value
RNA id TU125661
length 473
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G106259
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27953518 ~ 27953990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacaaacattcaggaACTCAGGGCTTGAGTGTGTTGAATTTAAGCACTAtgctgtttcttttattttaatgttgtccCAAACAGACAGCTCCATATTGTACCTGTGTGTAATGCTTGCAGGTGTGGTTGCTTTTGCACTGTCCGTTTTGATAGACGTAGTGATGCCCTTCCTGGAACCACGAGTTGATGATGTCAGAGTAAGAGGCTACACCATGAGGAGACTGATGGATGTTCCAGCCGATGTGCTCGGTGTCCACTTCTGATCCAGTGCTGTTCTTTGAGCAGGACTCAGCCCTTATCTGAGCCAGTGCAGCCAGCGTGTCACTCCACTCCTGAGCAAGGATTAACCAAAAATAAGAaatcaaacacatacacatgcaatgCCTACCCTGAGCATTCTAAGTTCCTACTGAGCTGCAGTAGAAACTCTTCTGAGTTACAGTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125660 lncRNA downstream 8485 27944816 ~ 27945033 (-) True G106258
TU125592 lncRNA downstream 48489 27861840 ~ 27905029 (-) True G106195
TU125590 lncRNA downstream 171718 27779132 ~ 27781800 (-) True G106193
XR_003402778.1 lncRNA downstream 764726 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 808644 27143707 ~ 27144874 (-) True LOC117597606
TU125662 lncRNA upstream 274 27954264 ~ 27954479 (-) True G106260
TU125666 lncRNA upstream 9781 27963771 ~ 27964010 (-) True G106264
TU125667 lncRNA upstream 11073 27965063 ~ 27966251 (-) True G106265
TU125671 lncRNA upstream 13992 27967982 ~ 27968201 (-) True G106269
TU125726 lncRNA upstream 84100 28038090 ~ 28078875 (-) True G106319
XM_026914328.2 mRNA downstream 13696 27925890 ~ 27939822 (-) True LOC113526894
XM_026913761.2 mRNA downstream 74899 27865109 ~ 27878619 (-) True zdhhc7
XM_026913760.2 mRNA downstream 74900 27865109 ~ 27878618 (-) False zdhhc7
XM_026914111.2 mRNA downstream 94157 27854836 ~ 27859361 (-) True cog8
XM_034305151.1 mRNA downstream 106696 27825324 ~ 27846822 (-) True wdr59
XM_026913729.2 mRNA upstream 229543 28183533 ~ 28205626 (-) False LOC113526564
XM_026913728.2 mRNA upstream 229543 28183533 ~ 28205624 (-) True LOC113526564
XM_026913722.2 mRNA upstream 275448 28229438 ~ 28233387 (-) True foxf1
XM_026914417.2 mRNA upstream 461145 28415135 ~ 28422985 (-) True irf8
XM_026914419.2 mRNA upstream 469807 28423797 ~ 28446913 (-) True dusp22a
TU125182 other downstream 796378 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1345189 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1712513 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2404590 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1748162 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2389541 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2775968 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2862589 30816579 ~ 30819614 (-) True G107803

Expression Profile