RNA id: TU125749


Basic Information

Item Value
RNA id TU125749
length 1173
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G106336
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28069599 ~ 28070870 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctgctgttacagaaaattaatcccCACCTTCTGATAGGAGAATTCAAGTGGTGTAGTGGTGCACAGTGGTATAATAAATGATAACTTACTTCTTATAAATCATCATTGGTCATGGAACCACAAACCAAAATACTGTAATTGCTATCAACACTGCAGACAAAAAGGAGCAGTGGTAGCGAGTCTTTGGGAAAtagacacaaaataaaacaattctctTTTACATTACCACATTACTGCAGATGTTTGTGCTAAGTTTGTTTAATAATTGCAGAAATTACATTGGTACTGTAATTTAACCCCAAAGCTTCAAACACAAGAGCCCTTAGACTGCCTGGCTGTGGGAATGGAGATAATAACCTGCTGTTGTACTCGcaattgttttctttaatgtaCACATTATTTTGCTATGTAACTTTTTCCGTCCATCACAtcagctgaaacatttattttacttcagGACATATTAGTAAATAGGACAGTCAGGtaggacagaaacagaaatatataacaACACTGACCTGTAGTTTTATATTACGCTTTGTGCATATTGTGCATTTTCATACAACTGAGCCATTGTAAGTGACCTGTAACAGAGGTGTAAGAGCAATAAGCGTTATTTTTCACGTGTAGATGAGCTTATAGGTGCACCTTCAGCCAGACATCAGGATCAGGCAGATCAGTGGAGGTCAGTGTGAATCAGTGTGAATCAGTTTGGTCCCTGCACTTGTTAGCTCCCCCTGTAGGTGCTGTATGAAAAGCGACTCAGGAGCAGTGGGATGTGGAACTTCTGAGAAGCATCAGCGATGGTGAAGACAATCTACAGGCAACAAagtgaaaaaggaaaaaaggattGAGCGGGGAAAAACAGTTATTCAagagttcttcaagggttcttagcttcctataAAGGGTTCTCCTTGAAATGCTTTCTGATAGGGACTACACTGtgttgtaggattctacatTTAAGATTTGCCTCAGAGGGACAATTATAGAACTGGCAAggattatacattatttaagaGTGTAACATAAAACCTTTCCTCTAGAGAACCTTGTTTTCCACAATCCTTTTACTTTAGGATTAATTGTATCTGTATGTTTGTgatgtattattatatgtcaCTGTAAAGTGACTTTGGGTGTGAGAAAAGTGCTatgcaatcaatcaat

Function

GO:

id name namespace
GO:0046914 transition metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125671 lncRNA downstream 101398 27967982 ~ 27968201 (-) True G106269
TU125667 lncRNA downstream 103348 27965063 ~ 27966251 (-) True G106265
TU125666 lncRNA downstream 105589 27963771 ~ 27964010 (-) True G106264
TU125662 lncRNA downstream 115120 27954264 ~ 27954479 (-) True G106260
TU125661 lncRNA downstream 115609 27953518 ~ 27953990 (-) True G106259
TU125776 lncRNA upstream 26903 28097773 ~ 28097994 (-) True G106356
XR_004578301.1 lncRNA upstream 188827 28259697 ~ 28261304 (-) True LOC117597514
TU126111 lncRNA upstream 529249 28600119 ~ 28601535 (-) True G106653
TU126113 lncRNA upstream 533443 28604313 ~ 28605437 (-) True G106655
TU126114 lncRNA upstream 535388 28606258 ~ 28608041 (-) True G106656
XM_026914328.2 mRNA downstream 129777 27925890 ~ 27939822 (-) True LOC113526894
XM_026913761.2 mRNA downstream 190980 27865109 ~ 27878619 (-) True zdhhc7
XM_026913760.2 mRNA downstream 190981 27865109 ~ 27878618 (-) False zdhhc7
XM_026914111.2 mRNA downstream 210238 27854836 ~ 27859361 (-) True cog8
XM_034305151.1 mRNA downstream 222777 27825324 ~ 27846822 (-) True wdr59
XM_026913729.2 mRNA upstream 112663 28183533 ~ 28205626 (-) False LOC113526564
XM_026913728.2 mRNA upstream 112663 28183533 ~ 28205624 (-) True LOC113526564
XM_026913722.2 mRNA upstream 158568 28229438 ~ 28233387 (-) True foxf1
XM_026914417.2 mRNA upstream 344265 28415135 ~ 28422985 (-) True irf8
XM_026914419.2 mRNA upstream 352927 28423797 ~ 28446913 (-) True dusp22a
TU125182 other downstream 912459 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1461270 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1828594 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2520671 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1631282 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2272661 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2659088 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2745709 30816579 ~ 30819614 (-) True G107803

Expression Profile