RNA id: TU126111


Basic Information

Item Value
RNA id TU126111
length 1417
lncRNA type intronic
GC content 0.44
exon number 1
gene id G106653
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28600119 ~ 28601535 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTAGTGTCAATCCTGGGTTCCAGAAATGTTTTTTGGTTGATGAAAGTGTTCCTGTGGTGAAAATGCACCTAAAGATCCTGGGTGTACATTggaaaaaatattgtttcttCAAGACTGCCATTGTCAAGCCCAAGACCCGGACTAGCCGAGATTGAGTCAAGACCATTTCAAGGCAGTCAAGGACAAGTCAAGATTAAGTCCAAATGAAAGCTAGACTGAGTcgagaatgagacagaaaacCATCAAATTATTTTCAAGGCCAAGCGTTTATTTCAACTAGTTGACTTCATGCGTGCTTTTTGTCAATCATTAGGCTACATTTTCTGGAAGATGTGAAGTTACTActtgtcaaactttgtgtattctaaaagaaaagacaacacaaacattatttttacaatctCTCAGTTGAAACCAAGACCATATTTAATAGGACCAATGCCCAAGACCACCAATAAgttaaagacaagtccaagtcaatacaaAAATGTCTTGAGACAGACTCAAGTCCTACAGCTCTAGCATGATGCAACACACAACAGTAGCATTTACAGTTAATAAATGCAcgggacagtaaatacacaggacagtgcTAATTAGACAGCTCCAGGATTTTACTCATTATTCAGTGAATCTGAGTAAGCGCATGTAGAGAATCCTTCCCAGGTGGACGTTTGAGAAGAATGGTGGCTGCGGTCACTGTTGAGACAGGAagcctctttctgtctctttatctctctgtttctctcgttccctcctcctgtctgtctctctccctctctggaGGATCAGACTAAAAGCGTTTCAGCTCAGTTAATCCTGTTAGCTGAGCTCCCGTGTTCAGACAGGGCGGCTGCAGGCTCTTCTGAGgcctcctttctttttttttcctcctccctcCATCTTTCATAGCTTTGCAAAACACTGACCAGGACCCTCAGCCTCAAAGGCACGACCTGACACGCAGGGGGGCCGAGCGGTTGAAAGAGAGAACACTGAGCTGCTCAGGCATGAGAGAGCCGAACTGAACTAGCCTTCTGGATGGAGCTGGATTTAGCataacagtacacacacacaccatctgtgcatacaaacattcacacaccctCTAAAGCCTTCACATCAGGGGTGAGAGCcactttttttccctgaatCAGCACTGCTCGAGGccttaaaacaaacacattggCTCACGCTGACTCCTGCTAAACCCTGCCCCGAAGCAGGATGTAGTAAACAGTATGTTAGCATGAATGTTTCCAGAATGCCACAGCCACACCAGTTTGGAAGACATACTACTAAGTATGTAGCCAGAGTACTCGTCATGGTGTAATACATTGCACACTGCATGCAATATAGAAGCATTTCAAATCCAAATTAACAGTAGTTTCATTTTTATCCAGTAGGGGACGct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578301.1 lncRNA downstream 338815 28259697 ~ 28261304 (-) True LOC117597514
TU125776 lncRNA downstream 502125 28097773 ~ 28097994 (-) True G106356
TU125726 lncRNA downstream 521244 28038090 ~ 28078875 (-) True G106319
TU125749 lncRNA downstream 529249 28069599 ~ 28070870 (-) True G106336
TU125671 lncRNA downstream 631918 27967982 ~ 27968201 (-) True G106269
TU126113 lncRNA upstream 2778 28604313 ~ 28605437 (-) True G106655
TU126114 lncRNA upstream 4723 28606258 ~ 28608041 (-) True G106656
TU126115 lncRNA upstream 7411 28608946 ~ 28609764 (-) True G106657
TU126118 lncRNA upstream 12732 28614267 ~ 28614543 (-) True G106660
TU126125 lncRNA upstream 55455 28656990 ~ 28657189 (-) True G106667
XM_026914421.2 mRNA downstream 147804 28448739 ~ 28452315 (-) True LOC113526963
XM_034305449.1 mRNA downstream 153181 28430071 ~ 28446938 (-) False dusp22a
XM_026914419.2 mRNA downstream 153206 28423797 ~ 28446913 (-) True dusp22a
XM_026914417.2 mRNA downstream 177134 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 366732 28229438 ~ 28233387 (-) True foxf1
XM_026913748.2 mRNA upstream 168090 28769625 ~ 28774040 (-) False LOC113526572
XM_026913747.2 mRNA upstream 168090 28769625 ~ 28774030 (-) True LOC113526572
XM_026914369.2 mRNA upstream 180489 28782024 ~ 28790810 (-) True atmin
XM_026913490.2 mRNA upstream 190256 28791791 ~ 28799363 (-) True cenpn
XM_026913456.2 mRNA upstream 206572 28808107 ~ 28852636 (-) True LOC113526432
TU125182 other downstream 1442979 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1991790 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2359114 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3051191 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1100617 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1741996 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2128423 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2215044 30816579 ~ 30819614 (-) True G107803

Expression Profile