RNA id: TU126114


Basic Information

Item Value
RNA id TU126114
length 1757
lncRNA type intronic
GC content 0.39
exon number 2
gene id G106656
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28606258 ~ 28608041 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCTTTATCTCATCCTGCCAAAGCATGGACACATTTCAGGGCTTTTTGTCCTCTGTCTGTGATGAAAACACTGCCTTAGTCTGCTTAGTATGCGTCAGGTAAAGCAGTGAATGTAGAGCTGCTGGATACCatgatacatatttttaattattaaagaatgtcacatCATacttatccatttgtagtttcatttaatgttgtggattgtcCACAAAATGTTAGTTCATATTTTCACTTACGTCATAGCAGCGATAAactctctcttgaaggtaataagacaaaaaaatgagaaattacTGAGAAATTGCAAAGcataaattcctctgtcctgaagattctgacaaagtgctgacactggagactccttccataaatgtaaaataaacacccccttatatgtttttaactgttatataataacacattttgctctattgtcagggctgctgttatagaaaataaatcaacaccttccaaccaatcagaaccgagaattcagcagcactgtggtctAAACTTGCAAACCTTAACACAAGTAGTCACACCCAAAATAGCATTAGCTATTATCAGAATAGATACGTGGTGTAACAGTAAACCAGGATTGAATTAGCCTGCTAgcaatgttagctagttaaagGACTGCTTCGTCATTAGCAAAGAGTTAGCTAGTCCCCGAAAAATAGCCACCCAGGTCAGAAGATTGGAAAGTGgaagacaaaaaagagacaaatggAAAACAGAGAGATTTTTCAACACCTCAGTGCTAGCTTGAGGTCAAAGTGCACAGTCATGGCTGTGAAAAGCCAAAGAGTTTAGAAGGATAAATTAAACACAGAGAATTTGTTCACCTTGTTTGGCATTCTAAAGTCTTAGCACACGGATCAACTGGTACAAAGTTGTGACAAGAGATAAACTTTTGTCAGTATTTATAGAAAACTTAGCGAGACCcctttgtgcatgtgtttgtgtgttagcaTGAGGCAGCTAACATGGAGCTGCATGGTTGCTGGGTATGAATGTTTGATAGGCAGGTGACTGACTGAGAGTGAAAACTGAAAGAGAGATATTGCAGGCCAGACAGACAGCTCTCACGGCCTCAGTCTCACCTCGTTCCTTTGGTCCTTAGCTATTTATGAGCACTGTTCCTTTTCACTCTGTTTCCATATTCACTCCATCTCCATCTGTGCTCTTTCTATCCTCAATCCTCTCCCTCCTTTTTCTTTAGCAAGAGGCAGTGAGTCCTGGTTGTCACAAGGTTGCCATAATAAGTTTGGAAGTCGCTTTTCACAAGGCAGAGGGATGGGGAATTGGGAATTGTGTACCACAGCTCAGTATtctagtttaaaaaaacttaTGTGCTTCATTCCGTATTAAAGTATCCCTGAACATGCAATTTTAAACCACTAAAATGCTGTATGTAGAAGAAACAATGCCAGGATGCTATATAATGAATATCTACTAGCCTAATACCACTAGAAGTAGCTAACATATTTATTCAGCTAGTTAgctgctaaagaaaaaaaaaaagctggctTGCATTTGTCACAAGTAAACTTTGAGATTTCAGTAGCAGATGTAttcaacagcagaaaaaaagtgtcaaaataTAGCAGTCAAAATGTGTTCTtcgctaatgttagctaagttagcACACTAGCTAGCATGCGTTAAGGTCAGGGAGGTTTGTTTTGTAAGAAAGCTAGCGTCAGTCTGTACCAcaccagaataaataaatatattgttataaatCCCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126113 lncRNA downstream 821 28604313 ~ 28605437 (-) True G106655
TU126111 lncRNA downstream 4723 28600119 ~ 28601535 (-) True G106653
XR_004578301.1 lncRNA downstream 344954 28259697 ~ 28261304 (-) True LOC117597514
TU125776 lncRNA downstream 508264 28097773 ~ 28097994 (-) True G106356
TU125726 lncRNA downstream 527383 28038090 ~ 28078875 (-) True G106319
TU126115 lncRNA upstream 905 28608946 ~ 28609764 (-) True G106657
TU126118 lncRNA upstream 6226 28614267 ~ 28614543 (-) True G106660
TU126125 lncRNA upstream 48949 28656990 ~ 28657189 (-) True G106667
TU126132 lncRNA upstream 79298 28687339 ~ 28688110 (-) True G106674
TU126134 lncRNA upstream 81414 28689455 ~ 28689974 (-) True G106676
XM_026914421.2 mRNA downstream 153943 28448739 ~ 28452315 (-) True LOC113526963
XM_034305449.1 mRNA downstream 159320 28430071 ~ 28446938 (-) False dusp22a
XM_026914419.2 mRNA downstream 159345 28423797 ~ 28446913 (-) True dusp22a
XM_026914417.2 mRNA downstream 183273 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 372871 28229438 ~ 28233387 (-) True foxf1
XM_026913748.2 mRNA upstream 161584 28769625 ~ 28774040 (-) False LOC113526572
XM_026913747.2 mRNA upstream 161584 28769625 ~ 28774030 (-) True LOC113526572
XM_026914369.2 mRNA upstream 173983 28782024 ~ 28790810 (-) True atmin
XM_026913490.2 mRNA upstream 183750 28791791 ~ 28799363 (-) True cenpn
XM_026913456.2 mRNA upstream 200066 28808107 ~ 28852636 (-) True LOC113526432
TU125182 other downstream 1449118 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1997929 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2365253 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3057330 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1094111 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1735490 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2121917 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2208538 30816579 ~ 30819614 (-) True G107803

Expression Profile