RNA id: TU126136


Basic Information

Item Value
RNA id TU126136
length 2239
lncRNA type intronic
GC content 0.38
exon number 1
gene id G106678
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28695559 ~ 28697797 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcaaattcaactGATATTTCTCCTTAGtagattgtttttaaacaaatataagactgtgatatttttactcatttctagcttgaaattgtcttattctattggcagatcttttgcttatttaaatcaagctaaattatctgccaatagaataggcttgaaattagtaaaatatgACTATGAATAGACTTAATGGTCTTATATCGATTATAAATCTcataacattttctttattcaagatatcttcacgtgctgtcattttttgcagtgttcacCAAAGCGATGTGGTAATGGGTTTATTTATGCTGCTTTTTCTAACCGTGCCTTGCCATCTACCTGCACAAATCACAATGTGTAAGGAGCCAGTGTAACAAATGCAGCTGTAAAAGCAGTCTAAACATGTCTAACACctcgctagctaagtgtgatttcctcacagaGGGAACGCCATGCTTTGATCGAGTACCAAAAGAgtaacaaaacagacaaaagccTAATAagtggctgtcaaaatgtctgtgaagcTCCTGAGCCTCggtcagaatgaaatctttacaTGCGATCATCTCCCTTTTTCACTTCTGGGcgtaaccagattttaaaatgctaggaCTTTATTGTAGTTGACATACAAAAGAGAAATACATTTCATCTCAGGGaaacctgtagttttcagaatgACAGTAGAAAAGGGATGTGAAGGGTTTTTATAAGACACCATGCATTTAATATGTACCTTCtacatttctgaaaatgtgCTTTACTGCAGCTTTATGTTGGGTGATAAGCAGGTGATAATCCCAACACACGCTCCATGTGACACATACACAACTTACATGCACATAAACGTGTgcaaaggcaaagaaatggcTCAGTGTCATGGCAAGTGTTAAATTCAGCCATCTGTGGAGAAAGTTCAACATGAGTGCGACAGCTGAAGAAATTCAACCTCCCTCAGACAAGTGGTCCAGTTAGACACGGTCAGGTTTTGGGCCGAGGAAAAACCTCAGTGAGTTATCTGATCATCTGAGAGGATGGTTAGTCTGTAGTCAAATGTCCATCCAGGACTTGTATCAATCCCCTGTGTGTCTAATACACAAAGGGAAAGCTTTTGTTTACTGTGCAGCTGAAtcattcttaaaataaaacagtttttgaaaggttgaaatgtataaaagcatttgtaaaagctaactaacattatatgatttataataactccataatatttataatatttataatctcaACAAAGAAATAGTACATAAttttgcccatattcaagatgttttcaCTTGTTGACTTTTAGTGACGTGACTGCACTGTGGAGTAATTTGGATCTTTTTTAATtcctgacagaacacattagctggcttgtttttgagttattgaggtttggattaaacccaatTTAATTCAAGTGTCCAGTTATAAAGGTTAATAATATaagaacttaataataaatataataacactgGTAATAGAGGTTTGtgatttctaccactgtaacataaaaaaaacaacagatccTTTGGCAGTGATTCACTGACCCCTGAGAGTCCATGGACCCCACTTGGAGAAAACCACTGTGTTAAAACATCTGATATTTAATGTGAATGTGATGCACATGTGCCATTATGTTCTGCCTGATGTCTATTTAGTGTTATTTAGCATTAAGTATAACCAGATTAGGGTCAGTGACGGCTGGTAACACATCATCATTCAGTGCCTTCAGACAAAGACGTCTTGTTTGGCAGGCACGTTTGCCGTTGGTTCCTCTGCATCCTCTCATCCTGTCCTTAAAAATAAGCaaggaaaggaaacaaggaggcactattttatatataaaaattataacaagAATCATCTGTGGATTACAACAAACTGAGGCCACGTTAAAGGCTGTGAGTTTATACCGGATGATTTGTTGGTGCTCAGACTTGGAGTACGTTAGGAGGCCACAGAGCGCTGACTCAGAGGGTAGCAGCGCCAGTCAGCTGAGCAGCCCACAGGAATTTACCAGCCTTCTGCATTTACTTTGCTAATTACATAGCTGTGTGCAAAGCAAAGAGAGCAAGCTACTGACCCCAGTGACTGCCAGCCAGATCGCCCACTGAGCTACAGAACCACAGAGGAACAGGCTCTTAATACATGCAGGTAAAACGGTGTTTAGTGGGTTCACACTCAAAACCCAGGTTACATTTGGGCTTTTGTTATTCAAACTCACAACCGCTGAGCAGTg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126134 lncRNA downstream 5585 28689455 ~ 28689974 (-) True G106676
TU126132 lncRNA downstream 7449 28687339 ~ 28688110 (-) True G106674
TU126125 lncRNA downstream 38370 28656990 ~ 28657189 (-) True G106667
TU126118 lncRNA downstream 81016 28614267 ~ 28614543 (-) True G106660
TU126115 lncRNA downstream 85795 28608946 ~ 28609764 (-) True G106657
TU126139 lncRNA upstream 9333 28707130 ~ 28707742 (-) True G106681
TU126140 lncRNA upstream 10102 28707899 ~ 28709570 (-) True G106682
TU126166 lncRNA upstream 63721 28761518 ~ 28761737 (-) True G106705
TU126180 lncRNA upstream 66942 28764739 ~ 28779018 (-) True G106713
TU126243 lncRNA upstream 107236 28805033 ~ 28805430 (-) True G106772
XM_026914421.2 mRNA downstream 243244 28448739 ~ 28452315 (-) True LOC113526963
XM_034305449.1 mRNA downstream 248621 28430071 ~ 28446938 (-) False dusp22a
XM_026914419.2 mRNA downstream 248646 28423797 ~ 28446913 (-) True dusp22a
XM_026914417.2 mRNA downstream 272574 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 462172 28229438 ~ 28233387 (-) True foxf1
XM_026913748.2 mRNA upstream 71828 28769625 ~ 28774040 (-) False LOC113526572
XM_026913747.2 mRNA upstream 71828 28769625 ~ 28774030 (-) True LOC113526572
XM_026914369.2 mRNA upstream 84227 28782024 ~ 28790810 (-) True atmin
XM_026913490.2 mRNA upstream 93994 28791791 ~ 28799363 (-) True cenpn
XM_026913456.2 mRNA upstream 110310 28808107 ~ 28852636 (-) True LOC113526432
TU125182 other downstream 1538419 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 2087230 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2454554 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3146631 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1004355 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1645734 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2032161 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2118782 30816579 ~ 30819614 (-) True G107803

Expression Profile