RNA id: TU126180


Basic Information

Item Value
RNA id TU126180
length 866
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G106713
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28764739 ~ 28779018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attaaaaattaaatcccaacttttgactggtagcgtgtatatatatttccacTGTGGTTGactgtgtattttttatgtcGTTGTATAACGTTGTGTAGATTAAGAATCTGGTTTAAGATTAAATTCAAGGCTTCATTAACTACAAATTTGACTCTCAGATGAATGTAATATTCAGGTTGTGTGCTAGAAAAATGCAAGCTAAAGAAGAACAAATAATGTTAAGGGATGTATTTGTATCCAGGcattgaaaatgtaaatgattagcttttttttttttactcacaataCACGACAAGCTCACGTTACACCATGCTGCGTTTCCAacgaccttttttttttcaatctgtaACAGCAATGTATGTCCTTTATGATTGTAAACATCATGTCTGcaacaagtaaaaaaaagtcactatGCTATTATGTAACATTAGCAGTGCAGTGATGTTTGGGATTTTCGGACAGCCGTGCACATTGCACATAGATTTAGTGAAacaccatgtcacatgacctgctgAGAGCCAATGATATGTAGACTGTATGTTATGATAGACATATGATAAGCAGATGAGACTACTTGTTCTTTTAATGGCAGTATAGATGAAACATAGCCATATGCCACTGAAAAGtgttagaatatttttttttatttctggaagtttatttaaaatacatatatataaatatatagttttagGGCAAAAGCTTTAAAGCTCCAAGCGTCTTTAGATTTGCTCTGTTCATTGATTTAGATCTATGCAAATCCTGTCTTTCCATTCTGTGTCAGTGTTCCAAGGTGTTggtcattttgttttaaatgaagctagtaAAAATGATGTATTCTCACTGTTTAGCATGTCtgacagcat

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126166 lncRNA downstream 3002 28761518 ~ 28761737 (-) True G106705
TU126140 lncRNA downstream 55169 28707899 ~ 28709570 (-) True G106682
TU126139 lncRNA downstream 56997 28707130 ~ 28707742 (-) True G106681
TU126136 lncRNA downstream 66942 28695559 ~ 28697797 (-) True G106678
TU126134 lncRNA downstream 74765 28689455 ~ 28689974 (-) True G106676
TU126243 lncRNA upstream 26015 28805033 ~ 28805430 (-) True G106772
TU126422 lncRNA upstream 422989 29202007 ~ 29202844 (-) True G106951
XR_003402809.2 lncRNA upstream 494059 29273077 ~ 29280183 (-) True LOC113526826
TU126683 lncRNA upstream 841781 29620799 ~ 29661699 (-) False hipk3b
TU126679 lncRNA upstream 880623 29659641 ~ 29677509 (-) False hipk3b
XM_034305534.1 mRNA downstream 52804 28467758 ~ 28711935 (-) False gse1
XM_034305533.1 mRNA downstream 52804 28467758 ~ 28711935 (-) True gse1
XM_026914361.2 mRNA downstream 52806 28467758 ~ 28711933 (-) False gse1
XM_026914360.2 mRNA downstream 52807 28467758 ~ 28711932 (-) False gse1
XM_026914421.2 mRNA downstream 312424 28448739 ~ 28452315 (-) True LOC113526963
XM_026914369.2 mRNA upstream 3006 28782024 ~ 28790810 (-) True atmin
XM_026913490.2 mRNA upstream 12773 28791791 ~ 28799363 (-) True cenpn
XM_026913456.2 mRNA upstream 29089 28808107 ~ 28852636 (-) True LOC113526432
XM_034304966.1 mRNA upstream 29089 28808107 ~ 28823830 (-) False LOC113526432
XM_026914399.2 mRNA upstream 413363 29192381 ~ 29205443 (-) True mafa
TU125182 other downstream 1607599 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 2156410 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2523734 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 3215811 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 923134 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1564513 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 1950940 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2037561 30816579 ~ 30819614 (-) True G107803

Expression Profile