RNA id: TU127088


Basic Information

Item Value
RNA id TU127088
length 264
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G107536
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30368887 ~ 30406964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtatacctctcGCAGTGAGGTGGTCTCTCTGATGAAGAACATGTTGATGATGCCGaggtattttattattttggttcCAGGAATAAAAGACAGCGGCGTCATTTTAACCACAGTGACGGAACCTCCGGGGTACGAACGACTCGACCTCAGAGAGCGAGAACGACCTTCTGGCAACGGACTGGACTTCTCCAGAGaggacactgagagagagagagagagagagagagagagggagagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127060 lncRNA downstream 57041 30309847 ~ 30311846 (-) True G107510
TU126731 lncRNA downstream 445694 29922742 ~ 29923193 (-) True G107217
TU126723 lncRNA downstream 524030 29765376 ~ 29844857 (-) True G107210
TU126702 lncRNA downstream 644510 29724114 ~ 29724377 (-) True G107191
TU126704 lncRNA downstream 660987 29680263 ~ 29707900 (-) True G107193
TU127127 lncRNA upstream 14288 30421252 ~ 30423338 (-) True G107574
TU127103 lncRNA upstream 36559 30443523 ~ 30469903 (-) True G107550
XR_003402799.2 lncRNA upstream 307154 30714118 ~ 30715453 (-) True LOC113526678
TU127459 lncRNA upstream 378629 30785593 ~ 30849684 (-) False selenot1b
TU127460 lncRNA upstream 404083 30811047 ~ 30826087 (-) True G107800
XM_026914034.2 mRNA downstream 9357 30355521 ~ 30359530 (-) True tnni1c
XM_026914460.2 mRNA downstream 112803 30137011 ~ 30256084 (-) False tspan4a
XM_026914459.2 mRNA downstream 146529 30137011 ~ 30222358 (-) True tspan4a
XM_026913330.2 mRNA downstream 304521 29971467 ~ 30064366 (-) True luzp2
XM_026913663.2 mRNA downstream 602142 29728087 ~ 29766745 (-) False lrch3
XM_034304953.1 mRNA upstream 20216 30427180 ~ 30433055 (-) True miox
XM_026913453.2 mRNA upstream 30065 30437029 ~ 30444319 (-) True adm2b
XM_026913573.2 mRNA upstream 45743 30452707 ~ 30464074 (-) True LOC113526499
XM_034305125.1 mRNA upstream 62996 30469960 ~ 30489913 (-) False ppp6r2b
XM_034305127.1 mRNA upstream 62996 30469960 ~ 30489913 (-) True ppp6r2b
TU127077 other downstream 24011 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 654895 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3211747 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 3760558 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 4127882 26239330 ~ 26241005 (-) True G105376
TU127397 other upstream 322994 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 409615 30816579 ~ 30819614 (-) True G107803

Expression Profile