RNA id: XM_034305072.1


Basic Information

Item Value
RNA id XM_034305072.1
length 509
RNA type mRNA
GC content 0.53
exon number 3
gene id selenot1b
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30785593 ~ 30849697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCCTCGCGCGACACTagcagaagaagcagaaggCCGTGTGGTGCCGCTGAGGCTGAGCGTGATGGCGGCGCGCTGCTTCTCGCTGTTGCTCCTGTGTGTGCTGTCTCTGTACCACACCGCTGCTGATAACGGCAGTGTTAAAAAGCTGAAGATGCAGTACACAGCCGGACCTCTGCTCAAGTTCCAGATCTGCATTTCCTGAGGCTACAGGCGGGTGTTTGAGGAGTACACTCGGGTTCTTAGCCAGAGGTACCCAGACATCCGCATAGAAGGGGAGAACTACCTCCCTCAACCTGTGTACAGACACATCGCCTCCTTCCTGTCCATGTTGAAGTTCGCTGTAATCGTCCTCATCATCGTGGGAAAGGATCCGTTCGCTCTGTTCGGAATGCAGAGTCCCGGAATCTGGGCCTGGGGGCAGGAGAATAAGGTAAAGGAACATTTTCATGGCTGTTTGGATTCAACTGTGAACTCTACAGTGTGGCGATTTTAGGTGTTTAAATATGAT

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127473 lncRNA downstream 2545 30835634 ~ 30843492 (-) False G107806
TU127474 lncRNA downstream 2545 30835634 ~ 30843492 (-) True G107806
TU127476 lncRNA downstream 2545 30835634 ~ 30843492 (-) False G107806
TU127471 lncRNA downstream 2545 30836501 ~ 30843492 (-) False G107806
TU127475 lncRNA downstream 2545 30836501 ~ 30843492 (-) False G107806
XR_004578353.1 lncRNA upstream 50868 30900565 ~ 30908021 (-) True LOC117597590
TU127479 lncRNA upstream 69487 30919184 ~ 30989204 (-) False LOC113524890
TU127503 lncRNA upstream 146576 30996273 ~ 30998215 (-) False LOC117597523
TU127506 lncRNA upstream 146576 30996273 ~ 30999390 (-) False LOC117597523
TU127507 lncRNA upstream 146576 30996273 ~ 30998215 (-) False LOC117597523
XM_034305116.1 mRNA downstream 41541 30792940 ~ 30804496 (-) True si:dkey-30c15.2
XM_026913544.2 mRNA downstream 85858 30756449 ~ 30760179 (-) True pdp2
XM_034304940.1 mRNA downstream 90947 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034304939.1 mRNA downstream 90947 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034304938.1 mRNA downstream 90947 30740467 ~ 30755090 (-) True si:dkey-30c15.10
XM_026911251.2 mRNA upstream 707 30850404 ~ 30857147 (-) False LOC113524884
XM_026911250.2 mRNA upstream 707 30850404 ~ 30857147 (-) True LOC113524884
XM_034305071.1 mRNA upstream 707 30850404 ~ 30854568 (-) False LOC113524884
XM_034305070.1 mRNA upstream 8232 30857929 ~ 30898090 (-) True ppp1r37
XM_034305388.1 mRNA upstream 69488 30919185 ~ 30930200 (-) True LOC113524890
TU127465 other downstream 26423 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 114006 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 501161 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1132045 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3688897 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile