RNA id: TU127466


Basic Information

Item Value
RNA id TU127466
length 1522
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G107804
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30820709 ~ 30822357 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagtgtgtgtgtgtgtgtgtgtgtaccgttCGGCTGCGCAGACTCTGCAGGCCCAGTTTATCTGTGAGCTCGCTGACCGGCATGGCGTTGGGCAGATCCTGTTTGTTAGCGAACACCAGCAGCACGGCGTCCCTCAGCTCGTCTTCctgcagctTTGGAGAGCTCATCAGCAGACTCGGCCACTCTCTCTCGGTCATTACTGTCCACCACGAAGATCAGACCCTGAGGAGAGACCACACAGCACAGcatgtgggcggggctaaacACAGCACAGATCACTGATTGGCCGAACCGCAGTCGTCCGGTTAATGATGATACCTCTGACTAGAGCGTGTTTTCTCGCGGACGGTGATGTTCAGTAGCGCAGtgactctcacacactttatttaGGAAGAAAAATCGGAATTATATCGTAATGATTGACAGGTGCGTAGGTGTTTTCATCTCTCCGACACTTCctgtaagccccgcccctttccaTCCAGGTCACGCGCTCTCACTTTGTGTCACGATAAACGGAGAACGTTTTCAATTCATGAATCATCAGctaacttcacacacacacacacacgtgtatatttaatgttagcttaatatatttattagaaatGCCGTAAAGAGCCGTTTTGTCCATTTCCAGCTGACTTTTTACGAATAATCTTAACATCGATGATAATCAGACGATTAAAAACGCTGTTCTGGGGCTGGAAATGCTCGTTTCTGTGTCTCTTTAGACTCACGGTTCTGGACGATTAAATCGTTTATCGCgatattttaaaacagaaaatcgtgataagggaaaaaaataaatcagtatcaCACAAAACCTGGGTTCGGATTATTTGTTTTCAACCCTCAGTAAcgttttcttgttattaatatataaaaaaatcgtCTTTTAATCGTCTTATAATCGTCTTATACCTATCGAATCTAACGCTGTGTAAGATTTATCAGTACAGTCACTGAGATcgtaagtattggcaccctggtCGTGTTTACGTCGCTCGTCTCCAGTAAACCTCGCGTTAACATCACACGAGATTTGGAGGTTCTGATTGTCATCATCCTCCACAGAAGCTCCGCCTACTTTTACACGCTCTACAGACGACCACTTCGGATAAAATCACTGTTCAAATTCGTCACTCAGATATTCATCTCCGTCTGCTGCTTAGCTCTCGAACCTCTTTACCCACAGACGCGGAACGCTGCAGATTTCTTTCGGCTTTCTCGGACGTTTAAAAGCTCTAACGTTCAGAAGCGTAAGCGCTACAGCACACGAGCGACCGCTGGCTGAACAAGGAGCAGAGTTACAGCACAAACGCACTTAAAGCGACTTCCTCTGCgacttacacacacttcaccgACGCTCCAAAACCTTAAAGGTaactctaaacagataaaaagtaagacGCTGTTGTTTAATCGTTAAAAAGAATTGTAATAGTTGAACTTATGAAGGGAGAAAtttcacttttacatttttcctcttctgtctgtatagtattttattcatttctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127464 lncRNA downstream 287 30819206 ~ 30820422 (-) False G107803
XR_003402799.2 lncRNA downstream 105256 30714118 ~ 30715453 (-) True LOC113526678
TU127103 lncRNA downstream 350806 30443523 ~ 30469903 (-) True G107550
TU127127 lncRNA downstream 397371 30421252 ~ 30423338 (-) True G107574
TU127088 lncRNA downstream 413745 30368887 ~ 30406964 (-) True G107536
TU127468 lncRNA upstream 5794 30828151 ~ 30829653 (-) True G107805
TU127470 lncRNA upstream 13277 30835634 ~ 30884613 (-) False G107806
TU127473 lncRNA upstream 13277 30835634 ~ 30843492 (-) False G107806
TU127474 lncRNA upstream 13277 30835634 ~ 30843492 (-) True G107806
TU127476 lncRNA upstream 13277 30835634 ~ 30843492 (-) False G107806
XM_034305116.1 mRNA downstream 16213 30792940 ~ 30804496 (-) True si:dkey-30c15.2
XM_026913544.2 mRNA downstream 60530 30756449 ~ 30760179 (-) True pdp2
XM_034304940.1 mRNA downstream 65619 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034305072.1 mRNA upstream 23680 30846037 ~ 30849697 (-) False selenot1b
XM_026911251.2 mRNA upstream 28047 30850404 ~ 30857147 (-) False LOC113524884
XM_026911250.2 mRNA upstream 28047 30850404 ~ 30857147 (-) True LOC113524884
XM_034305071.1 mRNA upstream 28047 30850404 ~ 30854568 (-) False LOC113524884
XM_034305070.1 mRNA upstream 35572 30857929 ~ 30898090 (-) True ppp1r37
TU127465 other downstream 1095 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 88678 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 475833 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1106717 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3663569 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile