RNA id: TU127474


Basic Information

Item Value
RNA id TU127474
length 1777
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G107806
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30835634 ~ 30884613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctttgtctctgtttctctccctttaatgtctctctcactcccccCCGTAGGTGTATATGACGGGATCTCGGCTCAGTAAAGCGGCTGTAATGAAGGTCTGCACTGAAAGCGGCGTGCCTGCCGGTGTGGGCCGGATGTCCTCGTCGTCTTTCCTGGTGCTTTGGGAGTCTGTGATGTACACGGCGGGTGGCGTGTCTCCGGTTTATTTGGAATTCTGGGAAGTTTTATTAGAGCAGAGCTTGCACTGAGGGGTGTGTGGTTACGGTGGTGTGTATCTCGTCTGATTAcgtttgtttgattgattttgATTAGCTCTGAGGGCCAAACATAGatttacagacttttttttttttatatctatgCAACATTTTTGCCAAATAAATCACTTTAGATCTGATGTTAAACAAATCAGCTGTACATTATTCTGTATTTAGATCAGTGAAAAGTTTATCTATAttcaaataaagttttaatCTGTAACCTGTAAATctgcacatttacattaaagGTTCAGCTGCAGTTAATATATTtagatttgtttaattttcatatgtattcagttgaaataaaatatatttcagttcaaatATAAAGCTCGTGTTGCCTgtttaaaggaaatgaaaacacaaagagagaagtgataaaTTAGTTGGATTTTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGCATCCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCCTGGCACGAAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACATTATTGACACACGTCAGACTCTCAGTTGCTGCTGATGGTGCTGCTGATCCAGGGGAGGTATCTGCACACCTTGGTGTAGACGCCGGGTTTGTTGACCTGAGCGCAGCCGTGGCCCCAGGACACGATCCCCTGCAGCTGACCGTTACACACCAGGGGACCGCCGGAGTCGCCCTGGCACGAGTCTTTACCTCCCTCCAGGAAGCCGGAGCAGAACATGTTGTCGGTGATGCGATTTGGGTAGGAATTCCTGCAGGCGGTGTCGCTCAGCACCGGGGCGTCCAGGCACATCAGTTTGTTGGGGTAGACGTTAGCTGAGGGACTGGTGTTGCCCCAGCCGGCGATGAGGCAGGACGTGTCGGGAGTGGGGCAGCTGCTGGGCAGAGACACGGCGGACACGTAGCTGTTGAAGGTGACGGGGCGGTTCAGCTTGATCAGCATGATGTCGTTGTCCAGGGTGGCGCTGTTGTAGCGCAGGTGACTGATGACCGCGGCCGAGTCGATGACCTGCTCGGTGCCCTCGTTGATGGCGATGTTGTGCTCGCCGAGACGCACCTGAATACGGGGCTTATAGCAGTGGCGGCCGACAGGACCCACTGGCTGTTGATCAGAGAACCGCCGCAGAAGTGGTAGCCGGGCGTTCAGAGACACGATATGCGGCAGGCTGTGCTTCTGACACTTTCGTAGCCTCCGGCGATCTTGTCGTCATCGTCCAGCGGCGCAGCGTGGACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127468 lncRNA downstream 5981 30828151 ~ 30829653 (-) True G107805
TU127460 lncRNA downstream 9547 30811047 ~ 30826087 (-) True G107800
TU127466 lncRNA downstream 13277 30820709 ~ 30822357 (-) True G107804
TU127464 lncRNA downstream 15212 30819206 ~ 30820422 (-) False G107803
XR_003402799.2 lncRNA downstream 120181 30714118 ~ 30715453 (-) True LOC113526678
TU127458 lncRNA upstream 2237 30845729 ~ 30849684 (-) True selenot1b
XR_004578353.1 lncRNA upstream 57073 30900565 ~ 30908021 (-) True LOC117597590
TU127479 lncRNA upstream 75692 30919184 ~ 30989204 (-) False LOC113524890
TU127503 lncRNA upstream 152781 30996273 ~ 30998215 (-) False LOC117597523
TU127506 lncRNA upstream 152781 30996273 ~ 30999390 (-) False LOC117597523
XM_034305116.1 mRNA downstream 31138 30792940 ~ 30804496 (-) True si:dkey-30c15.2
XM_026913544.2 mRNA downstream 75455 30756449 ~ 30760179 (-) True pdp2
XM_034304940.1 mRNA downstream 80544 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034305072.1 mRNA upstream 2545 30846037 ~ 30849697 (-) False selenot1b
XM_026911251.2 mRNA upstream 6912 30850404 ~ 30857147 (-) False LOC113524884
XM_026911250.2 mRNA upstream 6912 30850404 ~ 30857147 (-) True LOC113524884
XM_034305071.1 mRNA upstream 6912 30850404 ~ 30854568 (-) False LOC113524884
XM_034305070.1 mRNA upstream 14437 30857929 ~ 30898090 (-) True ppp1r37
TU127465 other downstream 16020 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 103603 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 490758 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1121642 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3678494 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile