RNA id: XM_026911250.2


Basic Information

Item Value
RNA id XM_026911250.2
length 2391
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC113524884
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30850404 ~ 30857147 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAGCATGTTTTTGAGGGACGGCCTGGAGTCAGAGCTGGTGCAGATcctgtaataaacacacacgcgGTCAGAAAGTTAGTCGTGCTAACAATAAGGAGTGTGTTCTCTCTGCGCTCCTCGCTGTTCCTCTCCATCATCAGCTGATCGGAGCCGTGAGCTGGAACACACTGTACAGACGATCAGCAGATACTGTGGCAGTGTGAGTGCAGTTCTCTTCATGATAATCACCACACTGAAGTCCACGTGGGATCCTCAGGGACACGACATGAGAAGTTCTGGCTGtgttttagtttctgttatccATGTTTCAGGATGTGATATTATATCTGCTGCCTCAGCCAAAATAAAGGACAAAAAATCTTTAACAATTAACAGGAGGTCAGAGAGTCAGAAAATGGCGCATCCTGACACTGTGTCCAGACTTTGAACCTGTTCTTCTCTCTGGTCTTTTAGCAGCAAAACATGACATCGTTATTATTAAAGACTCGGACTGAGGTTTCGAGACGTTTCTGAACCTGTTTGTTGATGCAGATGTACGTTTTCCTCCTGTTTTGATCTCTTCAGgtgtgtgatggacaggtcAGAGGTGTGGGCGGAGCCTCCGCACAGGTGCATGCTGGTCCTGACGTGTGCGCTCCTGGTGTGTGAGGTCGTCGTTGGACGTCTCTGTAACTCCCTCATTAACATGGTGGACAGCTTCCACACCCTCTACGTCCTCATTGGCATGACAATGTCCACACGAGGTGCTGAGGAGAACCCCAGCGTCTCAGCAGAACCGCAGGACGTGTCGTGTCCCGACTCCGGCGCTGTGGAGAACCGCACGTCTCCGCTCTCTGATGGAGTTCAGTACTCTAGGCTCCGCGTGCAGCCGGTCGGAGGTCTGATCTCAGCCCTGCTGctctcctcactgtgtgtgtcctTCAGCTTCGATATCCTCAGCCACACACTGCAGCCTCACCCCATACAGCGCCCTCTACTGGCCACGGCTGTAGGCGCCGTCAGTCTGCTGTTTAATCTTCTGCTGCTGGTGTGGAGAAGACCGAGACAAACAGACGCAGGAGTTAAAGAACTGAGAAACGGCGAGACAGAAACTCCTTTAACTCCAGCAGGTTCTCCTCACGATGGCGTCCTGATGTTCTGTAACCCCGGAGCGTCCAGCGTTCTCAGTCCAGACTCTCAGGATCACACCGTTCATCCTCAGCCCACCTCCATTTCCCACGATTCCACTCACACAGAAACAGTCGGAGAAGAGTCGAAGTGCTGCAGCAGAGGCTCAGGCCACGCTGCGGATCAGCAGTGTGAcgcgagtgtgtgtatgaggagcATCATCACGGTGTTCCGCAGCCTCCTGGGTTCTTCTCTGGTTCTGCTTAACGGATTCCTTCACCTTCTCTGTGTGAGGTTTCAGtggagctgtgatgtgagcGTGTACCTGGACCCGGGGTTCTCCATGCTCACCGTGCTGGTTCTGTTAGCGGCGGTGGTTCCTGAGCTCCAGCGTCACGTCTTACTCCTGCTCCAGGCGTCTCCACCAGGCCTGTGCACGGAGGAGCTGGCGGTGGAGATCGGGCGAGTCCCCGGCGTGTTGTCCGTGCACGAGCTCCACGTGTGGCAGCTCTCTGAGACCTGCGTCGTGGCCTCGGTGCACGTTCACTGGCCGTCGGGTCTGAGCGCGCTCCAGTGTTCGGAACTCCTGAGGAGCATCGCGGAGGTGCTGAGGAGGTTCGGGGTGAAGCGCTGGACCATACAGCCCGAGTTTCTGACCTCTCACCCCGAGGATGCTGCGTTACAGACACACTGCGCTCTGCGATGTGGGAAAGCGTGTGTGAGGAAGATGTGCTGCTCACCTCCAGAGGAACGTTTCAGCTCCACGTCTGTCCACGTGAACGACAGGATGCAGGACGTCATCATTCAGAACACACGCTTATAACCCTGATCATAAACACTCGATATTATATCAGCTACAGCGTTCTCGTACTGCTCGAGCTTCTAAACATGTGACGATGCTCTATAGTCTTACAATATTCACctaaaattataaacattttattactcTCTAACTGTCTCCCTCATCAAGagtgaaatttatttacataaatgttaaaaatgtaattattaaatgtaaatgataaatataggAACCAGTACAGCTCTATACTCAaccatttatatttgtattaaatgtttacatttacatttaacttttaaattgacttttttaaaatttgtatttgaTACTGAACTCATTTCTCACtgacattttgaacatttaagcataattttaataaagatagaaatttatttaaaacaacagcCTGACATTTCAGTggaatattttgttaaacataatgactgaaataattcatatttcttAGTAAATTATTTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127458 lncRNA downstream 720 30845729 ~ 30849684 (-) True selenot1b
TU127473 lncRNA downstream 6912 30835634 ~ 30843492 (-) False G107806
TU127474 lncRNA downstream 6912 30835634 ~ 30843492 (-) True G107806
TU127476 lncRNA downstream 6912 30835634 ~ 30843492 (-) False G107806
TU127471 lncRNA downstream 6912 30836501 ~ 30843492 (-) False G107806
XR_004578353.1 lncRNA upstream 43418 30900565 ~ 30908021 (-) True LOC117597590
TU127479 lncRNA upstream 62037 30919184 ~ 30989204 (-) False LOC113524890
TU127503 lncRNA upstream 139126 30996273 ~ 30998215 (-) False LOC117597523
TU127506 lncRNA upstream 139126 30996273 ~ 30999390 (-) False LOC117597523
TU127507 lncRNA upstream 139126 30996273 ~ 30998215 (-) False LOC117597523
XM_034305072.1 mRNA downstream 707 30846037 ~ 30849697 (-) False selenot1b
XM_034305116.1 mRNA downstream 45908 30792940 ~ 30804496 (-) True si:dkey-30c15.2
XM_026913544.2 mRNA downstream 90225 30756449 ~ 30760179 (-) True pdp2
XM_034304939.1 mRNA downstream 95314 30740467 ~ 30755090 (-) False si:dkey-30c15.10
XM_034305070.1 mRNA upstream 782 30857929 ~ 30898090 (-) True ppp1r37
XM_034305388.1 mRNA upstream 62038 30919185 ~ 30930200 (-) True LOC113524890
XM_034305068.1 mRNA upstream 104216 30961363 ~ 30967101 (-) False gemin7
XM_034305066.1 mRNA upstream 104216 30961363 ~ 30967020 (-) False gemin7
XM_034305069.1 mRNA upstream 104216 30961363 ~ 30966975 (-) True gemin7
TU127465 other downstream 30790 30816579 ~ 30819614 (-) True G107803
TU127397 other downstream 118373 30729958 ~ 30732031 (-) False bbs10
TU127077 other downstream 505528 30343531 ~ 30344876 (-) True G107525
TU126682 other downstream 1136412 29702152 ~ 29713992 (-) False hipk3b
TU125182 other downstream 3693264 27152312 ~ 27157140 (-) False si:dkey-151j17.4

Expression Profile