RNA id: XM_026913304.2


Basic Information

Item Value
RNA id XM_026913304.2
length 1334
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC113526349
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27193919 ~ 27202055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAAACAGGCCACTGGTTTTGCTGCTGTTTCTGTCCTGTGCCAGCCAGcacatttttcctttcttctggAGAGACAGTTAGCATTCAGAAAGCATGGCTTTTGTAGCACCACCAGGCTACCAGCCTATATATAATCCAagCATCCCATATGTAGGGCCTATCTGTGGTGGTCTTAGAGCGGGGATGTCACTCTATATCCAGGGAAAGATTCAACATCATATTAGCaaCTTTCACGTAAATCTGCAGTGTGGTGAATTTGATGGATGCGATATTGCTTTCCACTTAAACCCTCGTTTTGACTTCTGGGACAAAGTGGTCTTCAATACTTTCCAGAATGGCGTATGGGAAGGAGAGGAGAAAGTTCATAAGATGCCATTCCACAAGGGAGAGCATTTCGAGATGGTCATTATCGTCAACTCGGAGGGCTATCAGGTGAATGTGAATGGGCGAGAGTTCTACCTCTTTCAGCACAGAATGCCTCTGGAAAGGGTGTGTGCATTGGAGATTGGGGGAGATGTGTCCATTGATAGCATCAACATCATCGGGGGCATACAAGGCATGGGGGGAGGATGGCAAGGTGGAATGGGTGGTGGCATGGGGGGAGGATATCCTGGAGGTGGACCTGGTGGATATTATCCTGGTGGTGGAATGGGGGGAGGCTATCCAGGAGGTGGAATGGGTGAGGGAGGATATCCAGGAGGTGGAATGGGTGGCATGGGGggAGGTTATCCAGGACCTGGGTTTGGGGGAGGAAGCATGGGGTATCCAGGAGGAAATCTGCCAGTGATGGGATTGCAGCCTATCTTCAACCCTGGCATTCCCTATTCAGATATGATCCCTGGTGGAATGGTATCCAGGAGGACCATTATCATTAGAGGCATGGTGCCATATGGAGCTGACAGGTTTCACATTAATTTTTTAGTTGGAGCCTCAAGAGACATAGCCTTTCACCTCAACCCTCGAATTAGAGATGGAGTGGTAGTGCGTAACAGCCAGATTGGTGGTTGCTGGGGTGAAGAAGAAATAGATATCAACTTCAACCCCTTCCTGGAGGGACAGTACTTTGAAATCTCCATTCGCTGTGGTGAAGAGAAGTTTAAGGTGTATGCAAATGGGCAGCACATGTGTCATTTCTTCCACCGTTTCCAGCCTTACAATCAGATTGACATGTTGGAGGTGCAGGGAGACGTCCAGCTCTCATACATCCACTACTGAGTCTGCCTTCCCAGTGCATCTCACTTTGTTCCTGCTTTAGCTTTTAGGAATGCCTGTGTAATGAGCATTAGTGAAACTTGTTTTGTTATAtgcaaatcaataaataatgtatCCTTTA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003402778.1 lncRNA downstream 5127 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 49045 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 64747 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 86348 27105368 ~ 27107571 (-) True G105835
TU124929 lncRNA downstream 318085 26875595 ~ 26875834 (-) True G105666
TU125590 lncRNA upstream 577077 27779132 ~ 27781800 (-) True G106193
TU125592 lncRNA upstream 659785 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 742761 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 751463 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 752209 27954264 ~ 27954479 (-) True G106260
XM_034304984.1 mRNA downstream 7882 27175267 ~ 27186037 (-) True LOC113526685
XM_034304983.1 mRNA downstream 33820 27144888 ~ 27160099 (-) True si:dkey-151j17.4
XM_034305079.1 mRNA downstream 50324 27138247 ~ 27143595 (-) True LOC117597534
XM_034304982.1 mRNA downstream 55581 27132129 ~ 27138338 (-) True LOC113526953
XM_026913390.2 mRNA downstream 345956 26827024 ~ 26847963 (-) True pkma
XM_034305032.1 mRNA upstream 1712 27203767 ~ 27297171 (-) False LOC113526686
XM_034305048.1 mRNA upstream 1712 27203767 ~ 27294632 (-) False LOC113526686
XM_034305046.1 mRNA upstream 1712 27203767 ~ 27294632 (-) False LOC113526686
XM_034305037.1 mRNA upstream 1712 27203767 ~ 27294632 (-) False LOC113526686
XM_034305050.1 mRNA upstream 1712 27203767 ~ 27294632 (-) False LOC113526686
TU125182 other downstream 36779 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 585590 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 952914 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 1644991 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 2500097 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3141476 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3527903 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3614524 30816579 ~ 30819614 (-) True G107803

Expression Profile