RNA id: XM_026913317.2


Basic Information

Item Value
RNA id XM_026913317.2
length 2011
RNA type mRNA
GC content 0.46
exon number 9
gene id serpini1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21641638 ~ 21664327 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatttatatttatatatacagcagTCAGAGGCACCTGCCTCCGTGTAGTGAAGGACgaacgtgagagagagagagagagtgcaggaTATTTGCATCCATTTCGTCTTCAACATCTTTAAACAGACGctctaGTCTCTGTCGTCCACCATGTTGGCTGTCGGACTCTTCGTGCCCCTACTGTTGCTACGGGTTGGCTGTTGCCGGGCGACCGAAGTTCCAGAGGATGCAAGTGCCGAGTTCTGGGTCAGACTGTACCATCAGCTCCAGATGGCAGGGACCGATGACAACATCATCTTCTCTCCACTGAGCGTGGCGCTAGCGCTGGGTATGGTGGAGCTCGGAGCTCGAGGGTCCTCACTGCAGCAGATCAGACAGGCTGTGGGTTACACACAGTACAGAGAAGACGAGGAGTTCGCTGTCCTCAAGAACCTAACCCAGGCTCTGATTGTAGATGAGGCCCAGTACGTGGTGCATTTGGCAAACTCACTCTTCCTGCAGACCGGTGTTCACTTTAACCCTGAGTTCCTAAAGCTCATTAAGCATTATTTCCATGCTGAAGCAGAAACAGTGGACTTCAACGAGTCAGCTGCTGTGGCTCAACACATTAATGCCTGGGTCCAGAACCACACTGCAAATAAGATTCATGACCTGGTTTCTGCGGAGGATTTCAGCAGCTTGACaagaataacactgattaacGCGGTGTACTTCCGAGGCAGCTGGAAGAATCAGTTTCGACCTGAAAACACAAGAACATTTTCCTTTAGTAAAGATGATGGCAGTGAGGTGCAAACGCTGATGATGTACCAACAGGGTGACTTTTACTACGGTGAGTTCAGCGATGGCAGCTCAGAGGCAGGAGGAGTGTATCAGGTGTTGGAGATGCCATATGAAGGTGAAGACATGAGCATGATGATTGTTTTGCCAAGACAGGAAGTTCCGCTGGCCTCATTAGAACCGATCATCAAGGCCTCGCTGATTGAGGACTGGGCCAATAACGTCAAGAAGCAGAAAGTGGAGGTTTACCTGCCCAGGTTTAAAGTGGAGCAGAAGATTGACCTGAGAGATGCATTACAGCAGCTCGGCATCAAGAACATCTTCACCAAAGAAGCAGACCTGTCGGCCATGACAGCTGACACagaagAAGGGAGGGATCTGTTCATCGGGAAAGCCGTACAGAAGTCTTACCTGGAGGTGACAGAGGAGGGAGCGGAGGGAGCTGCCGGATCAGGAATGATTGCTCTGACAAGGACCATGGTGTTATACCCTCAGGTTATGGCTGATCATcccttcttcttcatcatccgGAACAGGAAGACAGGGTCCATCCTTTTCATGGGTCGAGTCATGAACCCAGAGGTCGTCGATCCCTTCGATCCTGACTTTGATTCTGTTTAATGCACCATGAATAGAAAGTAACGAGGCCCAAATAGCGCCAATGCCATGTATTTTCCCCTTCATGGTTTTCTACAGGGAGAACCCTGCATACGCAAATTATACTCTACATCATATGTGATTGTATTTTGATACTCTCAGCTTTAACCACAGGAGCAGATGTTGTAAATATATCTGAGATATCGGTCTCCGTGGCCATGATGGTAAAAGCAGCACAtgcatttatacatatttattgaGCTAATTAACTGCATTTCTTTTTCACCAGCCTCAGAGTATGCACTCTTCTTTACTGtaaatttgctgttgtgtttacaAAGTAGATATTTATTGAATATATACGTGCAGTTTTCtcttacttctctctctctcttgctttctatctttttcctcactgttctgAATCTTAGTATTTTTAATCTTCAATGTGGCTGAAGTACTGCTGAAATATTGACATGCCTTATAAGTTTTCAATTTCATGAATGTACAGTTACGGAAGCAGGGTTACCATGGTGACTCAGTATGCAGACCATCTGTTTGGTGTACAGGGATTTGAATAAGAGACACACCAGCTGTATTCTtgatttcagaaataaatatgaatgtggaaaaatct

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K23412 SERPINI1; neuroserpin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121720 lncRNA downstream 322086 21318140 ~ 21319552 (-) True G102808
TU121721 lncRNA downstream 329170 21309303 ~ 21312468 (-) True G102809
TU121581 lncRNA downstream 516683 21123315 ~ 21124955 (-) True G102691
TU121483 lncRNA downstream 637858 20995525 ~ 21003780 (-) True G102600
TU121291 lncRNA downstream 955453 20638871 ~ 20686185 (-) True G102458
TU122044 lncRNA upstream 131446 21795773 ~ 21796243 (-) True G103099
TU122103 lncRNA upstream 559258 22223585 ~ 22224021 (-) True G103156
TU122105 lncRNA upstream 560002 22224329 ~ 22224564 (-) True G103158
TU122106 lncRNA upstream 563301 22227628 ~ 22227863 (-) True G103159
TU122108 lncRNA upstream 564058 22228385 ~ 22228716 (-) True G103161
XM_026913538.2 mRNA downstream 7081 21623853 ~ 21634557 (-) False LOC113526476
XM_026913536.2 mRNA downstream 7081 21623853 ~ 21634557 (-) True LOC113526476
XM_034305085.1 mRNA downstream 66792 21495122 ~ 21574846 (-) True ppfia1
XM_034305501.1 mRNA downstream 149157 21467974 ~ 21492481 (-) False LOC113526680
XM_034305154.1 mRNA upstream 567121 22231448 ~ 22306769 (-) True si
XM_026913500.2 mRNA upstream 672433 22336760 ~ 22341441 (-) True slitrk3a
XM_026914311.2 mRNA upstream 1485781 23150108 ~ 23153649 (-) True LOC113526884
XM_026914213.2 mRNA upstream 1494405 23158732 ~ 23162309 (-) True LOC113526825
XM_026914031.2 mRNA upstream 1633028 23297355 ~ 23299010 (-) True aamdc
XR_004578325.1 other downstream 628538 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 674728 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 1661379 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 2290695 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 3444832 18187447 ~ 18196806 (-) True G101178
XR_004578321.1 other upstream 570376 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 1926618 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 2959189 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 3088285 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 3720998 25385325 ~ 25548928 (-) False si:cabz01090165.1

Expression Profile