RNA id: XM_026913338.2


Basic Information

Item Value
RNA id XM_026913338.2
length 1961
RNA type mRNA
GC content 0.45
exon number 3
gene id aqp11
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 23334177 ~ 23340381 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGGGAAAAGGCGTAACGGTAAAGTTACCGAGCCGGTCTGAAATGAGCGAGATGGCACGGTTGTGACGGAACTCCGCGGAAATGGCGGTTGTAGCGGTGTCTGTGTGCATGCTGGTGGGGATCGTGTTTATTTGCGAGATTGCGCGGAGAGCGACTCCGAAACTGCTCTCTGGGAAGAGGAGAGATTGCGGAATTTACGCGGCGGAGATCATTTCTACGGTTCAGCTGTGCGCATGCGCTCACGAGTTAAAGCTGCTGTCGGAAGACGCGCCCGAAATCGCCCTGAGCCTCACCTACGTTATAACGGTGGTCCACGCGCTGACGTTCTGCGGCGCTACCGGTAACCCCACGGCGACGCTCGAGCGCTACTGGTGCGACTCTCTGGGCGGCGCATGCGCACTGCGGAGGACCGCGTGCCAGTTCGCGGCGGCCGTGGCGGCGGCTTTGGCCATGCGCCGCGCGTGGGCTTTCGGACTCTCGGACCTGCACGCGCGCCATGAGCGGTCCGGCTTCACGTGCGCGAGCCCGATCGCGAACGTGCATCTGCTGCAAGCCGTGGCCGTGGAGCTCGCGTGCGCTTTTGTTGTGCACGCCGCGGCGACTTTCACGCGCGGTGTGGAAGAAAAGTACAGAGTGCACGCTGTAGCCGCCGTGATCACTACAGTGGTGTATGCAGGTGGCAGTACAACAGGAGCGGTGTTTAACCCGGCGCTGGCTTTCTCAGCACAGTTCCCCTGCAGTGGCAGCACGTTTGCAAAGAATGGCCTCGTCTACTGGCTAGGACCAGTTTTAGgcatgGCATGCTCTCTCCTGCTGTTTAATAAAGACATTCTGGCTTTTACTGCAAAGAGCACAACTCACAAGGACCAGAACCTCCATGCtgtcaagaagaagaagagaaactgAACAGAACTGGAAGCTTTAAATGCTGGttactgttttaaaatattgatttttaggACTATAGCACAGGAAGGTAGCTGTTTTAGCAGTACCTGAAATGGGGTTGGTTGAAATGTCTGGATGTCTTACAGACATTTTGCAATGGTGAGAATGGTTAGgacatattaatatatatatatatatatatattaaacatctCAACATagatttaatccatttaattGCTGCTATTATTTAGGAATCTagagaatacaaaaaaaactggAGATTAGTAGcacaaataacacacaacaggtgTAAGAGACCAGACTTTGCATGACTGTAATCCAAGTTCTCATAATTTCAGCATACATCATAGGAGGAAAGATGATATACGGGTATGATGAGGTAAATCAGAAATAGTTACATGATTATCATTACACTATATCAAGACAGATGAAGTCGTAAAAGCTTTATTTCCATGACTGACACCATCAGAGAAAAGAATGATATTTCTAAACTACTGAAGgctctgttttaaataatattcaaataatttcaCAGCTGCAGTTTTATAAAGTGTTGAATGTCGTCCTCTTTGATAGTGACTACGTATTAATTGTACAAGTAAGCCATAAGCAGATACTGtgaaacattacaaaatatgcAAACAGAGTGAATTTTTTCATACCTATCCAGTCTTATTACATGATTTAAGTATGTCACTAAAAAGTTTATCTCTGTAATGCAATGCAACATTCTTAATTGGGCCGTGTTTCAACCAAGACGTCTTTAGATTCGGCGCTATTTTAGCTAACAAGTAATTATTCCGCAGAACTATTCCTTAAATAGTACTGACTATTAATTATACGCACATTATTGCTGAGATTTCTGGCCAGGGATGAAGACTGCCAGTAGTTTGAGGTGAGAAAGTATAGTGAATATCTAACAAAGCACATTTCTAATACCTCTGATATGTAACAACTGGACCAAGCTAAGTTAATCAGTTCTAATATTAATGCTAATGATATCTTACAATAAATGAATGGCAATAAACAGCAAATATCCGTGTTTTTA

Function

GO: NA

KEGG:

id description
K09870 AQP11; aquaporin-11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU122741 lncRNA downstream 4076 23329676 ~ 23330101 (-) True G103727
TU122733 lncRNA downstream 10765 23321663 ~ 23323412 (-) True G103719
TU122712 lncRNA downstream 58895 23270144 ~ 23275282 (-) True G103702
TU122600 lncRNA downstream 71094 23262807 ~ 23263083 (-) True G103600
TU122573 lncRNA downstream 74989 23219022 ~ 23259188 (-) True G103576
TU122845 lncRNA upstream 171776 23512157 ~ 23513328 (-) True G103817
TU122848 lncRNA upstream 232208 23572589 ~ 23575679 (-) True G103820
TU123026 lncRNA upstream 308303 23648684 ~ 23699689 (-) False rnpepl1
TU123014 lncRNA upstream 392489 23732870 ~ 23738739 (-) True rpl35a
TU123018 lncRNA upstream 392489 23732870 ~ 23738739 (-) False rpl35a
XM_026914031.2 mRNA downstream 35167 23297355 ~ 23299010 (-) True aamdc
XM_026914029.2 mRNA downstream 35193 23297364 ~ 23298984 (-) False aamdc
XM_026914213.2 mRNA downstream 171868 23158732 ~ 23162309 (-) True LOC113526825
XM_026914311.2 mRNA downstream 180528 23150108 ~ 23153649 (-) True LOC113526884
XM_026913500.2 mRNA downstream 992736 22336760 ~ 22341441 (-) True slitrk3a
XM_034305528.1 mRNA upstream 115312 23455693 ~ 23504297 (-) False myo7aa
XM_034305527.1 mRNA upstream 115312 23455693 ~ 23498506 (-) False myo7aa
XM_034305526.1 mRNA upstream 115312 23455693 ~ 23498506 (-) True myo7aa
XM_026913998.2 mRNA upstream 173012 23513393 ~ 23535680 (-) True capn5a
XM_034304937.1 mRNA upstream 207011 23547392 ~ 23554751 (-) False dcun1d5
XR_004578321.1 other downstream 1027408 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 2321077 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 2367267 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 3353918 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 3983234 19350762 ~ 19350943 (-) True LOC113527011
XR_004578330.1 other upstream 250564 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 1283135 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 1412231 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 2044944 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 2044944 25385325 ~ 25548928 (-) True si:cabz01090165.1

Expression Profile