RNA id: XM_026913391.2


Basic Information

Item Value
RNA id XM_026913391.2
length 2704
RNA type mRNA
GC content 0.50
exon number 11
gene id pkma
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26827024 ~ 26847963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCTATCCACCCGTTTTGCGTAGGAATACATCCGCGTGCTGTGGCTTAAAGTAGTGCCGGCGGATTTCGCGGATCACCTTGAAGACGCTCGTGCGGCGTTTTGCAGCGCATCACTTCAAGAGGACTGTCATTTAAGAAGGATATCACCAGGCAACTCTGCTCTCACCATGCCGCACACTAAGACTCAGGACTTGGGCTCTGCCTTCATCCAGACGCAGCAGCTGAACGCTGCCATGGCCGACACCTTCCTGGAGCACATGTGTCTGCTGGACATCGACTCTGAGCCCACCACTGCCCGTAACACTGGCATCATCTGCACCATCGGGCCAGCCTCCCGCTCAGTGGAAATGCTGAAGGAGATGATCAAGTCAGGAATGAACATTGCTCGCTTGAACTTCTCCCACGGTTCACATGAGtatcATGGTGATACCATAAAGAATGTTCGTGAGGCTTGTGAGAGCTTTGAAGCAGGCAGCATCCACTACCGACCTATAGCCATCGCCCTGGATACCAAGGGCCCGGAGATCAGAACTGGACTCATCAAAGGGagtggCACCGCTGAGGTGGAGCTGAAGAAGGGAAACCAGATCAAGTTGACGCTGGACGATGCCTTCATGGAGCACTGTGATGAGAACACCCTTTGGCTGGACTACAAGAACATCACTAAGGTGGTGGAGGTGGGCAGCAAGATCTACATCGATGATGGCCTCATCTCTCTCCAAGTCCAAGAGATTGGCTCTGACTACCTGATGTGCGAGATTGAGAACGGCGGTATGCTGGGCAGCAAGAAGGGTGTCAACCTGCCTGGGGCAGCCGTGGACCTGCCCGCCGTGTCTGAGAAGGACATTAAGGACCTGCAGTTTGGAGTGGAAATGGGAGTCGACATGGTCTTCGCCTCATTCATCCGCAAAGCAGCTGACGTCCACGAGGTCAGGAAGGTGCTAGGAGAGAAGGGCAAGAACATCAAGATCATCAGCAAGCTGGAGAACCATGAAGGAGTCCGTAGGTTTGATGAGATAATGGAGGCCAGCGATGGCATCATGGTTGCCCGTGGTGACCTGGGTATTGAGATCCCCACGGAGAAGGTCTTCCTCGCCCAGAAGATGATGATTGGACGTTGCAATAGAGCTGGCAAGCCAATCACTTGTGCCACACAGATGTTGGAGAGCATGATCAAGAAGCCCCGTCCCACGCGTGCAGAGGGCAGTGATGTGGCTAACGCTGTTCTGGATGGGGCTGACTGCATCATGTTGAGTGGAGAgacagcaaagggagactacCCTCTGGAAGCAGTGCGCACACAGCACATGATTGCTCGTGAGGCCGAGGCGGCCATGTTCCACCGGCAGGTGTTTGAGGACCTGCGCCGCTGCACAGCGTACTCCACCGAGCCTGCTGAGGCCATCGCCATCGGAGCCGTGGAGGCTTCGTTTAAAATCCTCGCCTCCGCTTTCATAGTGCTCACTGGCTCCGGCAGGTCTGCTCATTTGCTTTCCCGGTACCGCCCCCGCGCTCCCATCATCGCAGTGACACGTAATGGGCAGACGGCCCGCCAGGCACACTTGTACCGCGGCATCTTCCCCGTGTTCTACAACAAACCCCCTAACGACGTCTGGGCTGAGGATGTTGACCTCCGAGTCAACTTTGCCATGGATGTCGGCAAGGCTCGAGGATTTTTCAAGACCGGCGATGTCGTTATCGTGCTTACCGGCTGGCGTCCAGGCTCCGGTTACACCAACACCATGCGCGTGGTACCAGTGCAGTAAACATCCACTCCTCTTCATTCCAGCCCTTCTAACCTTTCTCCTGCTCCTTTATCATTCAAGCACTTCTAGCAGACtggcattagcattagcaaggttTCCCAGGCTGGGCTTCACCTGGAAAGGGCCAGTTTTGACATCTTGTTTAATCCCAGTCAAGTATTCCTGCTTATTATCTGCTATTTTTGGCACGTGTGTCAACCCTTAGTCCTTTTTATTCACAAATGGCaatgtattattccttacacGAGTCAGGCGGCGGTCTGTCAGAGCGCAGGGTAATAGGGGTGTAGGTCAGAGCTACTGTACTTATCATGCAATCAGTATTCTTCTAGAACATTCCCATTGACCATAGAACTAATGTGCTGAAGCAAAAAGAGTACACTAGCAGCTCTGGCTTCTCCACCTTCCTTCACCATGACCAAGTGCAGAGGAATGTATTTTGCAAGTATGgatttgtctgtgtgttattaatctatgttttttttttttttgttgtttttttttcctccaccacTGCACTCCCACAGCTACTGTAGACAATGTTACATACTGTATTATACTTGACATTGAGATGTTTGGGTGTTGGGAAACCGGCAcctcataatataatatatatttttctcctaAACTGAGAAACATTGTCGGATGCTGTTAGTGTTATCCTGTTCACTGAGTTGTTTCAAAAAGAATctaagagaaaagagaaatgaaagttAGCAATGATTCCATCACACTTCCTGCCTGTCTCTCCTCTTGTTCTCACATTTCAACCTCACGGTGACCATGTGCATCAAGCTTCTGTGTGCAGGTCTCGTATCCACACGCTTCTGATTGTGAAACTTAGATTTAAACTATATGTACTGTGTGATATAAACCTTACTCTGTTGCATTGTCGAAGACTGGTTCAATCAAATAAAGAGAAGAGCACCTGTCATGA

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0030955 potassium ion binding molecular_function
GO:0000287 magnesium ion binding molecular_function
GO:0004743 pyruvate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU124902 lncRNA downstream 7307 26819466 ~ 26819717 (-) True G105639
TU124897 lncRNA downstream 38168 26787940 ~ 26788856 (-) True G105634
TU124872 lncRNA downstream 80685 26746119 ~ 26746339 (-) True G105611
TU124869 lncRNA downstream 83064 26743703 ~ 26743960 (-) True G105608
TU124746 lncRNA downstream 218695 26599533 ~ 26608329 (-) False LOC113526510
TU124929 lncRNA upstream 27632 26875595 ~ 26875834 (-) True G105666
TU125109 lncRNA upstream 257405 27105368 ~ 27107571 (-) True G105835
TU125118 lncRNA upstream 275314 27123277 ~ 27129172 (-) True G105842
XR_004578372.1 lncRNA upstream 295744 27143707 ~ 27144874 (-) True LOC117597606
XR_003402778.1 lncRNA upstream 340379 27188342 ~ 27188792 (-) True LOC113526487
XM_034305136.1 mRNA downstream 135289 26667267 ~ 26691735 (-) True rec114
XM_026913543.2 mRNA downstream 135289 26680356 ~ 26691735 (-) False rec114
XM_034305137.1 mRNA downstream 135289 26680356 ~ 26691735 (-) False rec114
XM_026913542.2 mRNA downstream 135289 26680356 ~ 26691735 (-) False rec114
XM_026913358.2 mRNA downstream 294890 26515521 ~ 26532134 (-) False ube2q1
XM_034304982.1 mRNA upstream 284166 27132129 ~ 27138338 (-) True LOC113526953
XM_034305079.1 mRNA upstream 290284 27138247 ~ 27143595 (-) True LOC117597534
XM_034304983.1 mRNA upstream 296925 27144888 ~ 27160099 (-) True si:dkey-151j17.4
XM_034304984.1 mRNA upstream 327304 27175267 ~ 27186037 (-) True LOC113526685
XM_026913304.2 mRNA upstream 345956 27193919 ~ 27202055 (-) True LOC113526349
TU124747 other downstream 218695 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 586019 26239330 ~ 26241005 (-) True G105376
XR_003402763.2 other downstream 1278096 25385325 ~ 25548928 (-) False si:cabz01090165.1
TU125182 other upstream 304349 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU126682 other upstream 2854189 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 3495568 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 3881995 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 3968616 30816579 ~ 30819614 (-) True G107803

Expression Profile