RNA id: XM_026913548.2


Basic Information

Item Value
RNA id XM_026913548.2
length 1999
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC113526481
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20924978 ~ 20929950 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtATCCACATGCTATCACAGAATGGTTTGGTATTGTGATATCACCTTTTACAAGTTCTGGAATTATTTACCAGGCTGtttattattgaaataaagTGAGGAGGAGCAGAGCATGCAGAGAAATGTCTGTTATCTACTCACAAACTGAAGTGTATCATATTCTTGATGTGCTGGGGAATGGCACGTTTGGAAAAGTAGAAAAATGCCGGAGACAGAGCGACGGAGAGCTGGTGGCTGTCAAAATTATGAGTTACAATGCCATTGGGAGCCAGTTGATCAAAAATGAGCTGAAGCTGATCGCCACCATGTTACGGTCCAACCTCAAGACGAGTCATATAGTTCACTTTTTTGAGGCTTTCTGTGACCCATCTCAGCACTACTTGGTGTTTGAGATGCTGGAAAAAAACCTATACGAGCTGCAAAAGGAGAACGGTTTCAGGCCTTTACCTGTGCGCAACATCAGGACTGTTACTTGCCAGATGCTGACAGCATTAGCTAAACTCAGAGAACTGGCCATCATTCACGCCGACCTCAAACCTGAAAACATCATGATTGTTAATCAGCAACGCTTTCCATTCAGGGTCAAACTGATTGATTTTGGCTCATCCAGCATTTTCAGTGAAGTGCGCTTTGTCAAAGAGCCCTACATCCAGTCCAGATTTTACAGAGCTCCAGAGATTCTCCTTGGACTTCCCTTCTGTGAAAAGGTGGACATGTGGTCCCTAGGCTGTGTGATGGCTGAGCTTTATTTAGGATGGCCTCTTTATCCAGGCGAATCTGAGTTTGAACAAGTGCGCTACATCTGTGAGACTCAGGGCCTTCCACATTCTCATCTGCTGAACATAGCTACAAAAACCAATCTGTTCTTCCAACTTACCATAGACCAACATGGTGCACCTGCATGGGAACTGAGACCTTCAATGCAGGGTCCTAATGGAGAAATCGCTGAGCATCGTAAATATATCTTCAGTTCTCTGGACCAGCTATGCAACTTGAATATCACAAAGGATAACAAGACATTCTGCAGTGAGGATGAGGCTGCTGAGATCACAGACTGCCACTATATGGTCGAGCTGATCAAACGAATGCTGGCCTTCATCTCCCATCAGCGAATAAACCCAGATGCAGCCCTGAGACACTCATTCATCACGCTCACGCATCTGGACTCCCCAGACACTCAAAGTTATTATGATCTGTCACTCTGGGAGCTGCAGAAAGCACTGATCCAGACATCATCTCCAGGTCACAGAGTAAAAAACTGCAACCCAAAAGCAGAGCAGGAAACAGGCAATTTGGGGAGACTAAAAGAGGAGTAACAAGCATGGATGTGCAAGCCATTAACATCTCTACTGAAAAGTGAACTGAATCAAAGCACTGACAACTGGACGTGACACAGACATTTGATGTTAAATGCCATCATTGTGATAGTACACTAAAGCAGAAATCATTCACACTCAAGTAGAAATCTTCAATATGTAGGTGAAATAAAGTAACCTGTTTTACAGCCAAAGCAAGAACGCAGTCTTAATGGACAGTACACATAAGTAGAATTGAAATTTAGAGTGTATTCACATTATGGGGAGAGTTTAGACAGATGGGAAAactatatttaagcaatataaaagattaataataataataataacaataataataataataataatttctaattaGTCATGGGTATATTGTGGAACAAGACaacaatctaaaaaaataaggcAAAGTGAACAGAACAGTAGtttgcacacaaaaaaacctcaaaaagTCAAAGTTTCATCATAATATTGATCTAAGCAAGATGTCATGAATAATTGGCAGAAATTGGCTAAAACATCTGGCAGACTTAAAACAGATATACTAGGAAGAATAGAGGGTGAGTATTTCAGCTGAGATCACCCAAAACCTATTTAAAGGGCAGAAAAAAAGTGATTGAAGGCATTTATAAAGGCATAATATTACTACCATTACTAGCCAGAgaatatttactttaatttata

Function

GO: NA

KEGG:

id description
K08826 HIPK; homeodomain interacting protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121291 lncRNA downstream 238793 20638871 ~ 20686185 (-) True G102458
TU121318 lncRNA downstream 343810 20578690 ~ 20581168 (-) True G102472
TU121286 lncRNA downstream 428677 20494257 ~ 20496301 (-) True G102453
TU121282 lncRNA downstream 446422 20478333 ~ 20478556 (-) True G102449
TU121277 lncRNA downstream 452233 20471871 ~ 20472745 (-) True G102444
TU121483 lncRNA upstream 65575 20995525 ~ 21003780 (-) True G102600
TU121581 lncRNA upstream 193365 21123315 ~ 21124955 (-) True G102691
TU121721 lncRNA upstream 379353 21309303 ~ 21312468 (-) True G102809
TU121720 lncRNA upstream 388190 21318140 ~ 21319552 (-) True G102808
TU121921 lncRNA upstream 640481 21570431 ~ 21652774 (-) True G102983
XM_026914094.2 mRNA downstream 79774 20820806 ~ 20845204 (-) True daw1
XM_034305343.1 mRNA downstream 85060 20820806 ~ 20839918 (-) False daw1
XM_026914093.2 mRNA downstream 85060 20820806 ~ 20839918 (-) False daw1
XM_026914095.2 mRNA downstream 87849 20820806 ~ 20837129 (-) False daw1
XM_026914384.2 mRNA downstream 352549 20566740 ~ 20572429 (-) True fbxo36a
XM_026913491.2 mRNA upstream 76495 21006445 ~ 21011237 (-) True sertad3
XM_026913492.2 mRNA upstream 76497 21006447 ~ 21013100 (-) False sertad3
XM_026913450.2 mRNA upstream 83285 21013235 ~ 21020541 (-) True blvrb
XM_026914175.2 mRNA upstream 197998 21127948 ~ 21137281 (-) True esrrd
XM_026914172.2 mRNA upstream 219113 21149063 ~ 21249503 (-) True LOC113526809
XR_003402829.1 other downstream 944719 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1574035 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2728172 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2838007 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5570341 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 23652 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 65391 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1304753 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 2660995 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 3693566 24623516 ~ 24711368 (-) True G104473

Expression Profile