RNA id: XM_026913560.2


Basic Information

Item Value
RNA id XM_026913560.2
length 5142
RNA type mRNA
GC content 0.46
exon number 14
gene id ppp1r13l
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25106429 ~ 25135256 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGTCTCAGAGCTGAGAGCTGCACACACCTGGGTGGAGTTTGAGAGCAGGGCAGCAGTGGGCAGGACTCTCCAGTCTAGAGGAATGCTGTGCTGTTTTCCCAAACGGAAGACATGCAGCATGCCATTTTGATCCGGAGGAAACAGACTACTACAGCAGTTACCAAGGCATAGGAGAAGTGTTTTCATCCGCAGCTACTGGATTAAAGCCGTCGGCCGCTTTATTGGGGTGAAACCACTCAGTTTACATGGAGAGACTTGTGACGTCCCTGTCTCATTTTTAAACAGGAAGTGTGTTGAATTAGTCAGAAGTTGTGCAGTAACATCCAGAAAGAGCCTGGAATCATGTCCTCCAACAACACCTTTGCCAGCAGCACACTGTTCCAGTCCATGACAGACGAGCTGAATGCGTCTCTGGCGACGGCGGATGAGCTATCTCGTGAGTTTAATTCCCTCCTGCAGGATATCTCCTCTACCAGCACTGGAAGCTCTAAAGAACAGAGCTCCAGCTCAAAACCTCAGAAAACCACCAGCTCCACTCAGACTGGCATCAATGTCACCAGTGTTTCCACTGCCAGTACCAGCAGAGATGCAGGTGGAAGTGTCATGAATAGAGGCACCATGTCTTTCCCCCAAACCACATCGCCCATCAGAGCTTCAGAGCCCAGCACTCGGTCATCAGACTCTTACTTTACCAGTGGTCGACAGCGCCCGAACTCCCCAAACCCCCAAGTCTATCAATTTACACCTGTTCAACCTCGAAACACTCGTGCTGAGCCTGTCCACTGTCATGGAACCCTGACACCCCCAAATCAGTCCCCACGTACCCAACGCCGGGCATCGCCAAACCCTGCCAGGTCACATGAACGGAACCTGAGTGGCTCGTTCACCTTCCCAGAGCTCGCGCCTGTTTTCAAATATGAGCAACAATCTGTTTCTAGCATGCTTCATGTCCCAGCCAGACCTGAGTCATGCCCAGTGGCTTTGCATGACTCATCTGCCAGCGGTCGTAGATCACCCAGGATGGACAGAGCTCCTTCTCCTGGACCTTTCAGCCAATCGGTATCGAGCATGTTGCCGCGCAGTTTCACTCCATTTAAACCTACAGATGAGGGTGTAGCGAGGCAGAACATCCTGGCAAAATGGAACGAGACGGACCTGGATGTTTCATATGAAAGAAAACCACACCACACATATGACAAGAATGAGTGGATCAGACCATCTGTCCCCAACAGCAACTGGAGAGAGTCCAACCTGGACTCACCCACTATGCCtcgaaagGACGCTCTGCCCCGTCATCTCACACCAGCCGATGGCTCCTTGCCCAGGAACACCCGTATCTCTGTGCCCCCTGATCATGTTTCACCCACCCAGTCATCATTTAACCCTCAGCCAATCATCTCCCGCGTCTCCATCCCTCCTACATCATCCGGTCTCCGTCCACGTAGGCCCATCCCCCTGTCAGTCATCATGAGGCTCCAGAACCCATACTATGCAGCAGCCACCAGATATCCACGTGGCACAGAGGGCGAGCGCGATGTCAGCATGCCACGCCAGCCTTTGCCTCTGCCCCTGCCCCGAGAGTTGCTTTACCACTTTCAGCCTATCCTTCAAGAGCAGAGACCTCCGGTCTATTATGCAGAAGCCCCCAAGTCAACCTACATGGAGCCGGTAAAAATAAACTCAGTAAATAAGCCGTCTGTGCTCCCAGAAACCCTGGCGCCCTCAGCCGAGCAAAGCAAACCCAGAGTAGAAGTTAACACTGATGATCCCGAGGCGGATTCGGCTCCTCGGCCCCTGAGCCCCACGCGCTTGCAGCCAGTGGTGGCCCCGGAGGCTCCTGTTGTCCCTGATATGGACGTGTTGCTCCAGATCCGAGCTGAGATCCCACGTGCTTTGAGGAAACGTGGCTCCATCAACCATTCACAGAGCTTGAAGATGATGCCCCGCCTTCAGCCCAACCAGTACAagcagatgattaaaaaaatgttccgCAGGAAAGGAACTCAAGCAAAGAGCGAGACAGGGAGCGAGAGCAGCTCCTCAGATGGAGAGGAGATTTCACCATCGATACCGTGCCCACCTCCACCGATCACAAACACAGCTATGCCAGCCCAGCAGAAGggTCTTCATTCGATCTTGCGGAAGCCTAAAGGCAGCAGTGTAAAGGGGCCACGCGCTCGTCTCAGTCCTCTGGTGCTGCTGCTGGACGGTGCTCTGGTTGGGGAGCTGGACACGGTGCAGAGAGCCATGCAGGAGATGAGTGACCCGAGCCAGCCAAATGATGAGGGCATCACCGCCCTTCATAATGCTATCTGTGGTGGGCACTATGCTGTAGTGGAGTTCCTTGTACGCATTGGTGCCAACGTCAGCGCCCCAGACAGTCACGGCTGgacgcCCCTGCACTGCGCTGCCTCCTGTAACGACCGGGCTCTGTGTGAGTTTCTGGTGCGTAACGGTGCAGCCGTCATGGCAGTGACAGAGAGCGACGGAGCCACGGCGGCGCAGAAGTGTGACCCGTATGCTGTGGGTTATGAAGAGTGTGAGAGCTTCCTCAGAGgaGTGGAGGAGGCCATGGGTGTGGAGAACAGCGGCGTGCTGTATGCCCTGTGGACTTACCCGGCCCAGACGCATGATGAGCTGAGCTTCAAGGAGGGAGACATGGTgaccatcctgaagaaacccgaGGGAATGGACTGGTGGTGGGCTTCACTCTGCGGGCGAGAGGGCTTCGTCCCAAATAACTATTTTGGGCTTTTTCCAAAGGTGCGGCCAAAATCACTGTGCTAGAGGTCCTCTACAGGCCAAGCTCCTGTACAACACTACAGAATCACTACAATGCatccatgatgtttttttggttttttttgcttataGTCATAGTATTTTCTTGATTGTGTAAGTTATAATATCAAGGGCTTGGTAGTAGAGGTGCATAAGTCACATTTTAGACAATTAaaaagttctttaaaaaaatctagtaTCAAAATCATATCTAAATCTTCTAACAGGTTGAATACATTGCCAAATTGTAGTCAAAGTTTGCTTTAGTTGCTTGGCAAATGTTACTTCCAAGCCCTCAACATGTCATGAAATGTTACCTGTTCTACTATAAATACTTTACACAGATTCTGATTGTAGGGAGTTTCTAGTCGAGGACTCTAACTTGTTCATTTGTGGTTTTTAGAGCTACTTTAACTTTCATTTATAAAAGGATTGTGACCTCCAAAGTCACATGGTTCAGTGATCAATGTACGCTAATAAGACACCAGTTAAAAGTATTGATATTGATTTGGCTGCATTTAATCCCAAACCCCCTATAAAATATGTGCGCAGACCTGGGCAAACCCTTtacatggtcaaattttgacaCTTTTTGCTATATGTAGTTATGAAAACTACAGGGGATGTCCAGAAGTCCTAGCATTTTAAAAGTCTAGATACTTAGTGAAgataaaagtgaaaagggagaaaattgcatttcatttcaattccacgtctacatttataacctagtatacttatggaaaaacaacattactgccaaatttgAAAGACTTCTAAGTTTACACGGGGAAATGAGTTCttactttgattatcagcatcagtgtgtgtctcatcacctgaggtaaaattCACTCACGGCATTTAAACACAGACCTCATCTTAGTCTCTTCGCTCGTCTGATCACTGTTCACACTAACATCATTGATGAAATCAtcgctgattaattcagtcacATCTGTTCtgtaaatttcttgttattaatgtcttttattaggtcattttcacatttttagaaCAGCGTGtataagtgctcttctctgttttgatgatgatgcgACGGTGCAGGAGCATTGCGGACAATTTGACAGCCAGTAtcttattacaaaataaattaattagacTTGTATCCATTTCTCTATGGCGCATAGCTATTTAATAACTTAAAcaaagcctgacattcactgtgtgaggaaatcatacttagctagcaaggttttagtcATCTCTAGGCAGAATAACTGTGTTTACCACTacgtttgttaaactggctagTCATacgtgatctttgcaggaagatagcCAAGTCAAGGTTAAAAAGTAgcctaaatttaaaaaaaaaaaacatttccacattgttttggttaaatatatataaaatgtttttatttaggctactttctaCTGTTTGATTGTCTTTTGTGGCTggttgccagaattcagccgcAGCAtcatctgacaggttttcccagaccaccacacacatacaaaggtttaattgtgtttgaatgtgaagttttctttatAAATGACAGGCTCAGTGGCTGAAATGCTAGTTACCTGAAGGTTTTATGTTCAAATACCAGAGCCCTTAAACAAAACCTTTAACCTTTTAGCTGCTATATTTAGATTAGATTCTCTCCCAAGTGAATGTACATGATCAGCGTGAGATCACATCGAATTAAATGCTTGTCATCTCTCAGATTGGCTagaaattcattaatttatcatCTCAGTATTGATTTTGGATGTGATTATTGAttttcttgtttgtgtgtgtgtgtgtctgtgtgtgtgtgggtcggTGCGCgtgcctgcgtgtgtgtgtctgtgtgtgagacagacacagagagagagagagagagagagagattagttGTGTATTAGCATCACACATTTGAGATACACTGAGTTAGATTAGATTTAGGTCTATTAGATTTACCACTCTCGTAACTAAAAACTGGCAATTTAGTATACAGGCTTTTCTCTGTTGTATGTTATTTTAGTCattatgaaatgtttaccaCTTCTAAGTGAACATTAATCCTGTACAGTATTTTGCTTAGGATGCATTTTTTAATGTCACCATTCATACGTAGGAATGCTTTGGTATCACTTTACATGAATGAATGTAGATTCCCTTTTCAAATCATTAAATTCTGGTAAttgtgtgtgatattaatatagtatttagtgtgatgagtgtctGCTTTAGTGtttagggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcacaagctgttacaaaataaataacatattgTATTTTCTGTGATGCAGTAAAAGCTTATTAAAAacttatataactataaactatatataactaAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123851 lncRNA downstream 26942 25043786 ~ 25079487 (-) False tmem91
TU123618 lncRNA downstream 445081 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 572010 24533737 ~ 24534419 (-) True G104320
TU123423 lncRNA downstream 622357 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA downstream 622357 24480391 ~ 24484072 (-) False sipa1l3
TU123871 lncRNA upstream 11104 25146360 ~ 25151156 (-) True G104694
XR_004578344.1 lncRNA upstream 56801 25192057 ~ 25214790 (-) True LOC117597583
TU123929 lncRNA upstream 103854 25239110 ~ 25241770 (-) True G104747
TU123932 lncRNA upstream 108216 25243472 ~ 25245244 (-) True G104750
TU123936 lncRNA upstream 108216 25243472 ~ 25244017 (-) False G104750
XM_026914350.2 mRNA downstream 26917 25044487 ~ 25079512 (-) False tmem91
XM_026914351.2 mRNA downstream 26917 25044487 ~ 25079512 (-) True tmem91
XM_026914352.2 mRNA downstream 28377 25044487 ~ 25078052 (-) False tmem91
XM_034305516.1 mRNA downstream 71547 25024817 ~ 25034882 (-) True bckdha
XM_026914366.2 mRNA downstream 329647 24767575 ~ 24776782 (-) True siae
XM_026913563.2 mRNA upstream 19926 25155182 ~ 25182105 (-) True rasgrp4
XM_026913566.2 mRNA upstream 20897 25156153 ~ 25182107 (-) False rasgrp4
XM_026913565.2 mRNA upstream 20897 25156153 ~ 25182107 (-) False rasgrp4
XM_026913564.2 mRNA upstream 20897 25156153 ~ 25182107 (-) False rasgrp4
XM_034305513.1 mRNA upstream 160202 25295458 ~ 25301413 (-) True LOC117597607
XR_003402792.2 other downstream 343648 24752612 ~ 24762781 (-) False clasrp
TU123617 other downstream 395061 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1495981 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2799660 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 4093329 20995341 ~ 21013100 (-) False sertad3
XR_003402763.2 other upstream 250069 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 250069 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 250069 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1104074 26239330 ~ 26241005 (-) True G105376
TU124747 other upstream 1433829 26569085 ~ 26608329 (-) False LOC113526510

Expression Profile