RNA id: XM_026913728.2


Basic Information

Item Value
RNA id XM_026913728.2
length 1925
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC113526564
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28183533 ~ 28205626 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAAAACAGAGACGAGTGTTTCACTGTAACAATCCAGTGGGAGTTGATGCTTTTTTCGCCATCTCTTGTTTGCTTTGAcgttcacacatacacatgtggCTGCTGTAGACAGCAGCTTCAGACTCTTGGTGTACTGGATGGAGGCACAGGGAGGGGCAGGTAGCCCAGATGAGACTAAAAAAGGCCAGAAGCTGCTGAAGCCCTCAACATCAGGAGAACTGTCGAAAGAGCCTTCCCATCATTCCCGGGGTGAGGAGGAGAGAGTCGTTCCCGGACACACCCCAAGCCTGCTGCATGTCATTGACAGACGGCGTGAGTTCCGGGAGCCTCTGAGCAGCGTTTCCTCTCTCGAGGTTCACTTCGACTTGCTTGACCTGACAGAACTCACGGACATGTCCGACCAGGAGCTGGCTGAGGTCTTCGTCGATTCTGATGAAGAAAACCCAGAGTCACCTGCGAGTTATCACCCACACCCAGGCAGAGGAAGCTACCTGCGCTCTCCCTCTTGGACGCGCTGCAGTAAGCCAGAGCAGTCCCACGACCGGAAGCACCACAGCGATTCAGACAGCACCGACTCCTATCACAAACTGGAACGGCCCaaaaaaccttgagagaaacacAGCCGGGACGCACACAGCTGGATCACGTTAACACACAGCCCCGTGGTGCTAAAGACAATAAAATGCTCTCGTCCTGCAGGAAGTATGGCAGCAATACAGAGCAACACAAACAGCCCTGGCATGTCTACATCCGATTTTTCTGAAGGGCTTTAATTGGTCTGGGTTCATTGAAAAAGTTTATTCCCGGAGCTCAGCTTTGAGTAAAACGGGGAGAACCAGGACAGGAGTTAGTGAGACGTCATAACATCTTGTGTTTGAGTGACGTATAGTTTGTCGCTTTTGAAAAAGTAACAGGATGAAGtgagtgtaaataataatgctCCTTAAGCAAGGCAGAAAGGAAGCTACCAGAAAAGCCTGTATATTAAGGATcgtaggacacacacacacacacacacacacacacacacacaaaattcccACAAAGTCTCAGATGCCAAGAAAcctttttaaacactgtgtataaTAGACATTTCTTAACCTTTAAAAATAGAACAAATGGTTAATCAACTCTCCAGTTTGAAATCAGATGTTGGACTGAAAATGTGATTTAGGTTTAATCTGATTATTACTTTAGACATAAAGGTGTGCTTAGGGATTTTGGcaatataacatataaaaatgaatgtttttgtcCAGAGAGACTTTCTCCTTTGAGTCGATATTTTATTACAGCTCATGAAATGAAAGCAGAATTTCACCGAAATATTACAAAGtttacaaattttacaaaaGAATTGTGTTGCTTAAAAATCACTGATCTCACCTTTAAAGGATCTACATCATGGAAATCGACTTTATCCTCATTTTTAAGAAGTTGCTTAAAGTCTGCAATTGTTAGAGggtgacatttttatttgcattgtattaataattattttacacattcagTTCTGCTCATCCTGAAGAGTACTGAATAATTATAGAGTTGACTGTATGTAGGTCAGATATTTAATGGTTACCTTTAGACATTGTTACTCATGACATCAACAAGAGATACAGTATTGAATGTATGTGTAGCAGTAACATACATGTAGTAGTCAGCTTTAAGACTTCAAGCTTTAATTAAGAAAAGATCTTtccatatttttgtcatattgtttTAATGCACTGCGTTTCTCATATCACATCACTGATGCTACAAGTGTTTTTGAAAAGTATAAACCAGGTGTTGCACAACCAGCActaatttacaatttacaagtCTTAACATCTGTATAAATAGTCCAGTTGTCCTGAAACTCAATAACAAGACAATTTTCTGTCACAAACCATTcacacattaaaaagaaaaatacaaggAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125776 lncRNA downstream 85539 28097773 ~ 28097994 (-) True G106356
TU125726 lncRNA downstream 104658 28038090 ~ 28078875 (-) True G106319
TU125749 lncRNA downstream 112663 28069599 ~ 28070870 (-) True G106336
TU125671 lncRNA downstream 215332 27967982 ~ 27968201 (-) True G106269
TU125667 lncRNA downstream 217282 27965063 ~ 27966251 (-) True G106265
XR_004578301.1 lncRNA upstream 54073 28259697 ~ 28261304 (-) True LOC117597514
TU126111 lncRNA upstream 394495 28600119 ~ 28601535 (-) True G106653
TU126113 lncRNA upstream 398689 28604313 ~ 28605437 (-) True G106655
TU126114 lncRNA upstream 400634 28606258 ~ 28608041 (-) True G106656
TU126115 lncRNA upstream 403322 28608946 ~ 28609764 (-) True G106657
XM_026914328.2 mRNA downstream 243711 27925890 ~ 27939822 (-) True LOC113526894
XM_026913761.2 mRNA downstream 304914 27865109 ~ 27878619 (-) True zdhhc7
XM_026913760.2 mRNA downstream 304915 27865109 ~ 27878618 (-) False zdhhc7
XM_026914111.2 mRNA downstream 324172 27854836 ~ 27859361 (-) True cog8
XM_034305151.1 mRNA downstream 336711 27825324 ~ 27846822 (-) True wdr59
XM_026913722.2 mRNA upstream 23814 28229438 ~ 28233387 (-) True foxf1
XM_026914417.2 mRNA upstream 209511 28415135 ~ 28422985 (-) True irf8
XM_026914419.2 mRNA upstream 218173 28423797 ~ 28446913 (-) True dusp22a
XM_034305449.1 mRNA upstream 224447 28430071 ~ 28446938 (-) False dusp22a
XM_026914421.2 mRNA upstream 243115 28448739 ~ 28452315 (-) True LOC113526963
TU125182 other downstream 1026393 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1575204 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1942528 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2634605 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1496528 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2137907 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2524334 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2610955 30816579 ~ 30819614 (-) True G107803

Expression Profile