RNA id: XM_034305343.1


Basic Information

Item Value
RNA id XM_034305343.1
length 2088
RNA type mRNA
GC content 0.42
exon number 13
gene id daw1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20820806 ~ 20845204 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATGAGGCGCGTAGTCGTGGTTGCCGTGGTAACGCTGTGTTAAACTCAAGCAGAAATGAGACTGAAGCGGCTCCACATTCGCTACTATCCTCCAGGTATAATTCTGGACTATGAGAAAGGAGGACAGGAGAGGAGCAGATGCATCGACCTGCTGCGCTTAACACCAAACACCGACGTGAATGAGTTGCTATCAGAAATCAGACGAATCGAGCCATTAATCACTGACTCACGTACCGATCAGGTGAAAGTGCTGATTAAACGATTACAGGACAAACTCAGCCAACCAGATGAACGCAACTTTTACCTGTTCAAgGCGCTTCAGGCTCACATCCTGCCTCTTACCAATGTCGCCTTCAATAAATCAGGGTCGAGAGATAAAATAGCTACAGGCTCCTTTGATAAGACCTGCAAATTATGGAGTGCCGAAACTGGAAAGTGTTTCTACACGTTTAGAGGACACACAGCGGAAATCGTCTGTGTAACCTTCAACCCGCAGAGTACCCTGGTTGCCACAGGCAGCATGGACACTACGGCTAAATTGTGGGATGTGGAGAGTGGTAAAGAGGTTTCCACCCTAGCAGGTCACTCTGCTGAgataatctctctctccttcaacACGGTTGGGAATCGTGTAGTCACTGGGTCATTCGATCACACGCTCACACTGTGGGATGTACCATcaggaagGcgaatacacacactgatagggCACAGAGGAGAAATCAGTAGTGTGCACTTCAACTGGGACTGTTCCCTCATCGTCTCTGCCTCTATGGACAAAAGCTGCAAGttgtgGGATGCTGAGAGTGGCCAGTGTTTGGCGACTTTGATTGGTCATGATGATGAGGTGCTGGATGTTTGCTTTAATTATACCGGTCAGCTCATCGCGACAGCTTCTGCCGATGGTACATCCAGGGTGTTTAATGCAGAAACCTACCAGTGTGTATGTAAACTTGAGGGTCATGAAGGAGAGATATCTAAGGTGTGCTTTAACCCACAGGGGACACGTGTACTAACAGCGAGTGCGGATAGGACAGCACGTGTTTGGTGTGTGAACTCTGGCTCATGTCTCCAGGTGTTGGAGGGACACACTGATGAGATCTTCTCCTGTGCCTTCAACTATGAAGGAGACACCATCATTACAgGCAGTAAAGATAATACCTGTCGGATCTGGCGTTGAGACTCAAAGAGGGCAACCTTCAGtattaacaaacacacacgaaCACGTTGTTGATCTATTCAGCCTTCTGACTTGCATATAAAGGTTGCTGAGaatctgctcacacacacatacactcacactagcAGTTTAAGAAAGCCTCCTATGAAATCTGTTTGTATCTCCTGTTCACACACCATTTGTTGCTTCACCTGTTGCTTCaccatttgcttttttttccgaATATGATGACATACGTTtaattaaaacactgacactcaCCAACAATTAACAGTACAATATGCGTGGGAGTAAATAGGTATAAGTGAAAATATTGtagattttaaagaaaattatattcaaattatttttggtAAACATGTTTTAGCAATTTTCCTATTTTACTTCCTATTAGAATTTACTTAGACTCCTAATGTACTTAATTTACACTCCTGATGGGAAGCAAGTAGGAAATAAACTGAAGGAAATCTGTCAGGTCTGAGCTGTTACAAAAATGAGTTGTCTTATATGGCAGCACTTTGAGACATGCTTTAAAGGGAACATATGTCACCACATTGCCTGGATACTGACATACTAACTCTAATGTCCATTatacaagaaataaattatCAGTGGTGAAAATGatactttagaaaaaaaacagaaaagtgtaaGTATGCTGTAACTACAAATATAAtcttattaaatataacaaatataagaaaaaaataaatataaataacttttgTCCACAAAAGTTCAAAGAATTTCTCCTGTGTTGTCTGTCACCATTTTTAAAGACTGGCTGGTGCAATGGATTATGGGAGCGAAAGATACATatactcaccagccactttaatagaaacgtgtatttcttctttttcaggcaattattcaatcagccaattatcagcactatgcataaaatc

Function

GO:

id name namespace
GO:0070286 axonemal dynein complex assembly biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060285 cilium-dependent cell motility biological_process
GO:0005929 cilium cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121291 lncRNA downstream 134621 20638871 ~ 20686185 (-) True G102458
TU121318 lncRNA downstream 239638 20578690 ~ 20581168 (-) True G102472
TU121286 lncRNA downstream 324505 20494257 ~ 20496301 (-) True G102453
TU121282 lncRNA downstream 342250 20478333 ~ 20478556 (-) True G102449
TU121277 lncRNA downstream 348061 20471871 ~ 20472745 (-) True G102444
TU121483 lncRNA upstream 155607 20995525 ~ 21003780 (-) True G102600
TU121581 lncRNA upstream 283397 21123315 ~ 21124955 (-) True G102691
TU121721 lncRNA upstream 469385 21309303 ~ 21312468 (-) True G102809
TU121720 lncRNA upstream 478222 21318140 ~ 21319552 (-) True G102808
TU121921 lncRNA upstream 730513 21570431 ~ 21652774 (-) True G102983
XM_026914384.2 mRNA downstream 248377 20566740 ~ 20572429 (-) True fbxo36a
XM_034305005.1 mRNA downstream 256725 20541643 ~ 20564081 (-) False zbtb38
XM_026913549.2 mRNA upstream 85060 20924978 ~ 20929950 (-) False LOC113526481
XM_026913548.2 mRNA upstream 85060 20924978 ~ 20929950 (-) True LOC113526481
XM_026913491.2 mRNA upstream 166527 21006445 ~ 21011237 (-) True sertad3
XM_026913492.2 mRNA upstream 166529 21006447 ~ 21013100 (-) False sertad3
XM_026913450.2 mRNA upstream 173317 21013235 ~ 21020541 (-) True blvrb
XR_003402829.1 other downstream 840547 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1469863 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2624000 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2733835 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5466169 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 113684 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 155423 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1394785 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 2751027 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 3783598 24623516 ~ 24711368 (-) True G104473

Expression Profile