RNA id: XM_026914173.2


Basic Information

Item Value
RNA id XM_026914173.2
length 6771
RNA type mRNA
GC content 0.47
exon number 37
gene id LOC113526809
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21149063 ~ 21249503 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGTCTTAGGAACTTCAGCACATTGCCAGGAACCTCAGTATTCATCATCTGATATCATCCTCTTTAAACATAGCaaagattttatatatagaaattataaataacatcattttAATCTAATTCTTTTAGTTTCACATCTGTGTAAAAAGCATCCAGTCTTTGGATGCACCATGTTACCCTGGAcgaatttgtttatttgtgcatttggatgtgtgtttttaatattcatCTGTATTTCGGAGACAAAAAAGCCACCCGTTGGATTGATATCGCCTGGAAACTCACAAACTGAGAGCAACCCCGGCTTTAATTCCACTGGTCTTAAACACAAGAGAGGACAGAAACACATCCAGTACAGCACGAACAGAACAAGAATACAGATTGATTTAAGTGGACCAAACGTGTGCGGAACGAGATGCTGTCCTGGCTGGATCGTTCATCCCAAGactaaaaaatgcacaaaatCAAAGTGTTCTCTTCGTTGTTATAACAGACCCATGTGCAGAAAGcgaagtgtgtgtcagtgtggttTACATTCTCAGCACTGTAAACAGAACCAAACCATCTCCTCATCTGAAATCACACCCACACCTGTAACCGTGCCAGAAGCCATGCCGACATACAGAACCACACCCTCACCTGTGACACCCACACCGGCCAGGACAGACTCAAACTCCATGGAGAAATATTCTGTACGCTGGAAGCCTCTAAGTCTGAAAGAGGCCCAGGCGATGCTGATGAGAAAAGCTCTAGTCAGAGCAGTAGGAGGGAATAAAATTGTTAACATCCTGCTAAAACACATTGAGGCTGAGAGGAACAGATTACAATCCTGCAACTGCACTGACGAAAAGACCAGCACTAAGACCTTGTACACCCAACAGGGCCAgtatacacttatatacactCCAGCGGCCGAGCGGATTAAAGTTCTCTTCACGCCAACCATCTGCAGGCTGCGCTGCTCCAACGGACACTGCTCCAACTACTGCGAGCGAGGCAATATTACCACACTGTACAGCAATGAGGATGCCACACACACCTCCGGCTTCAGAGTgttTTTGTGCCCCATGTTGTGTAAAAATGGAGGTGTGTGCATTCAGAAAGATCGATGCCTCTGTCCTTCCAACTTTACTGGAAAGTTCTGCCATATCCCCGCATCTTCATCTTCCCCCTCTGCCAATGAGGTTGAGAAGCCCTCGAGGGGTAATTTTCCAGCCAGTCAGGGGATGATGCATTCGGAGTACGTCCTTCCTTTACAGAGTCGACAGCAGAACCACACCAACGgGTCTCCTATGGTGACAGTTCGAGTCCGTCATCCTCTTGAAGCAACGGTGAAGATCCACCAGGTGGCGAAGGTCACTTCAGGTTCAGGCTTGGAGACGGTGTGGCGATCATCAGGGGTCTCGGGTTCTCTGGGGTCCCGGGGTCATAGCAGCGCGATTCTGGCAGACAGAGCAGAGGCTACACCCGCTCTCGTCCAGGCCCAAACCTTCAGGGGAGACTCTATCTACACAGAGGTGTCTGGGTTTAAATATTGCTTCAGAGAAGTTCGCAACGGACAGTGCAGTTCTCCGCTGCCTGGGCTCCGCAGTCAGGAAACCTGCTGCAAGGGAGATGGTTTAGCATGGGGAATAAAAGAGTGTACACTCTGCCCTCCAGTATCAGGAAGTGGCACAAGTCGAGAGAAAAGCTGTCCGAAAGGCTTTGAGAGGGTTAATGGTACACAGTGTGTGGCCCAGAAGGTGATCTCAGAGGAGAAGGATCAGTGTTTCCGTATAGTCTCTCAGGGCTCTTGCTCTTTGCCCATCCTGAAGAACATCACCAAGCAGATCTGCTGCTGCAGTCGTGTCGGTAAAGCCTGGGGAAGGAAGTGTGAGGCCTGCCCATATTTTGGATCTGTTGAATTTAAGGAGATTTGTCCTGCTGGTCCTGGCTACCATTACTCCCCCAACACGCTGAAATTGAATCAGAGGGTTACAGAACCACGCAACCCTGCACTGGTTTCTCAGACGAACCGCACGTCGACTACAGTGACTAGATATGATACATCATTATTACAATCAACAACAAGAAATGAGCCACCACAAAACCAAAGACCAACGAGGCCTCAGTCTGCAACTATCACCCATAACGTCAGGATTCAGCAGTCCAGTGCTGGTCAGAAACAGCCAATCACGTCAGAAGTTTTCATCATTCAGAATGAACCACAGCTGAGTCAGCACAGACAAACAGGAGGTCCTGCTTCACCAACTAGCCAGCCAAGCAGAGAACTTCCCCacaaacgtgtgtgtgaggCTAACCCTCAGGTTTGTGGGCCGGGTCGGTGTGTCGATATACCCGGAGGGAAACACACATGTGCGTGTAATCCTGGGTTCATCCTGAATTCTCAAGCAGGTCATTGCCAAGATATAAATGAGTGTTTGTTGAATCCGAGGCCGTGTCTGTCTGGTCAGTGTGAGAATACAGTGGGAAGTTTTCggtgtgtgtgtcctccagGCTACCGGAGCGATGCCCAGCAAAACCGTTgcacagATATTGATGAGTGTCGTCTGATCCCTAACCGTTGCACTAATGGACGCTGTGAGAACACACTCGGCagcttcaggtgtgtgtgcaggacagGATACAAATTTCAGAACAACACTTGCACAGacatTGATGAGTGTGATGACCCTCTCCGCTGTCCGGGGAAGGAGTGCATAAACACTCAAGGTTCCTACAACTGTGTGCCCTGCAAACCTGGATTTGGACTCCTTAATGGCCAGTGCACAGATATTGATGAGTGTCGTCAGCGTTCGTCGCTTTGCTCTAACGGCCGCTGTGAGAACACACCTGGCAgctacagatgtgtgtgtaataaagggTTCAAGCTGCAGGGTAGCATCTGCACAGATGTGAATGAATGTGAGGACTCTCTGCAGTGCCCTGGTCAGGAATGTATTAATACTCTGGGTTCATATAGATGTGTGTCATGTGGCCCTGGGTTTGCAATAACCAACAGAAGATGCACGGATATCGATGAGTGTCGTCAGGTTCCTGCTCCCTGTGCTAATGGCCGCTGTGAGAACGCACCTGGCAGctacagatgtgtgtgtcatACAGGATACAAGCTTCAAGACAACACGTGCAAAGataTAAATGAGTGTGAGAATCATCTGCAGTGTcgtggtcaggtgtgtgtgaacactCCAGGTTCCTACCGGTGCACATCCTGTAGAGCTGGATTCAGCTTTCATAATGGACAGTGCACAGATGTGGATGAGTGTGCTCAGAACACACGTCTCTGTGCTAACGGACGCTGTGAAAATACCCCCGGAAGCTTCCGATGTGTGTGTCGACCTGGATTCAGATTGGAGGTGAACACCTGTACAGATGTGGACGAGTGTGAGAACGAGCTTCAGTGTCCGGGGCAGAAGTGTGTGAACTCTGTTGGCTCTTTCAAGTGTGTTTCGTGCAGTCCAGGCTTCGAGATCATTAATGGCCAATGTCAAGaTGTGGACGAGTGCAGACGGACTCCATCCCCATGCTCTAACGGCCGGTGTGAAAACACTCCTGGCagcttcatgtgtgtgtgtcgctctgGATTCAAACTGCATGGAAACACCTGCacagATGTTGATGAGTGTGAGAGCTCTGGAATATGTGGgccaaagagtgtgtgtgtgaacttggACGGTTCATACAGGTGCGAGTGTTTGCCCGGGTTCCGTGCTACAGGACCTGGACGCCAGTGCCGAGACATTAATGAATGTTCAGAGGGCGAGTTCTGCTTCCCTAGAGGAGAGTGTGTGAACACAGAGGGCtcatacaagtgtgtgtgctctcaggGTTACCACACAAGTGCCAATGGGACTCTATGTCATGatgtgaatgagtgtgcccgagatggagtgtgtgaggacgGACACTGCGTCAACACTGACGGCTCGTTTGTGTGTCACTGCAAACCTGGTTTCACTGCCAATCCTGAAAAAACAGCCTGCCtggatgtgGATGAGTGTGCAGACTCTGGTGGGAGTGTATGTGGTTCTCAGCGCTGTGAGAACACCATCGGCTCGTTTCACTGCTTTGTCACCTGTGAACCTGGATACAGcctcacagctacaggagaGTGTGTGGacaTTAACGAGTGTGCaaacaagagtgtgtgtggccATCACATGTTCTGTCAGAATCTGATTGGAACATATCAGTGTATCTGTGACCAGGGTTATGAGACAGCACAAGACGGACAGTCCTGTGTGGacattaATGAGTGTGCGGTGATGGCGGGTGTGTGCGGAGCGGCACGCTGTTGGAATGTTGAAGGTTCATTCACATGTGAATGTGAGAATCGGCAGGAAGAATTTGACCCACTTACACGACAGTGTGTGACCACagggccAGGGTCATCATCACTCCCACCTCAGCCGGGAGAGCAAAAAGAGTGTTACTCTAGAGTGGATCGGAGGGGCCAGTGTGCAGTTCTATCCTCTAATACGACTGTACAGGAGTGCTGCTGCACTGTGGGGCAAGCCTGGGGGCTCAGGTGCCAATACACTCTCTGCCCACAAGCTGGAACACCTGAATTCCAAGCAATGTGTCCGAACGGACCCGGCTATGTGACTTCTGCAGTGGGGGCCTTCAGCTATAGGgACGTGGACGAGTGTAAACTCTTCGACCCGGATTTATGtaaaggtggtgtgtgtgtaaacaacaTCCCTGGTTACTCGTGTTACTGCTCCAGTGGATACTACTATGACGTGAACTTAATGGAGTGTATAGACAATGATGAGTGTGAGAGTGGGGATATGTGCCCGGGTGGTCAGTGTGTGAACACACTCGGTTCATATTACTGCAAGTGTGAGCCACCTTTAGTGCTGGATAACACACAGCGCTCCTGTGTCAACAATTCAGGCCTCACTGTGGaTGAGAACCTCTCATTCTGTTGGCTGCATGTAACAGCTGATCTGGTGTGTCAGAGACTTTTGCAAAGAATTCAAATGACATTTGCGGATTGTTGCTGTTTATATGGAGAAGCATGGGGGCTTCAGTGTGCTCTGTGTCCCCGCAGAGACGAGGagGAATATGAGACAATGTGCAGCTCTTTCGGTCCTCCTCCAAACTCTCCTCGGTATACAGAGCGTTTTGCCCCACTGCCGGGGGGAGGAGGGGGTTACAGAACGCCGTATGCTGCCCCCTTTTACCCGGACTTACCCTCGTTTGATTACAATGACTACGGTGCAGGAACAGGACACAGATCTGGATTGAGGACAGGACCTGACTCATATACCCCCTTCATGCCTCCTGGACTCGGCCCCAGGCGTTACTATGAGGAGGAAGATTATGACTCAGCTGCTGCTCCTCCATTTGCACCAGATCCTCGTACCGAACGCTTCTACGGCTCAAGTTTTATCCGACCCTCCCTCACTGAAGGTGAAGAAGACGAGGAGTCATGGAGAGGCCCTGCCCCTTTCCCACCTTTCACTGACAGAAGACCAGGAAGTGAAAGACCACGGAGAGTCTACGAAAggccTTACGAGTCATTCGCTGGCCTGCCAGAGTTTGAGTGTGGTATACTGCAGGGCTGTCAAAATGGCCGCTGTGTTCGTGTAGGTGAAGGATACACCTGTGACTGTTATGATGGATATCAGCTCGATATCGCCTCTATGACCTGTAAAGATGTGGATGAGTGTGAGGATCCAATCTATCCAGAGTGTATAAATGCACGGTGTGTAAACACAGAAGGTtcatataggtgtgtgtgtctgaggggATTCATCGCGTCACGCAGACCAAACTACTGCATACCTGCTTaatcaaagacacacacacacacacacacacacttacagcaaGAATGCTGACTCAATTAGCTATTAACTACATCCTATTTTATTGGATTATTTTATTGACACTATAGTTTTTATCTGTTATGGctgtaaattgttttttttatatatatttttatatataattttccaGATATTACACAAATGCAATATACAAACCATTTaagcacaaaacatttttactcTGTAAAAGTTTGGCTATCTGAGATGCAGATTGAGACACTGATACAGtaaacacaaataagtagagTTTATTTGAACCCGGTTATGAATGCACATTTATTTGAATGTCATTAGATGTTATGTTTGATGAATGAACTTCAGTGTCATAGAGTTCTAAAGCATCTTTATGTTTGTGATTGTACGGTTGTGTATCGCTCATGTGTAACACAATGCACTGTATTTGTTGCCTTTTGAATTTGACAGTGATTAATTGTTTTTCAATGATGTTCGCTCATTGTATTGCCTTATATTTTTGATACAGGTAATTCAGAGGTGTcaaaaataaatttgcaaatattatagttcattttcatgtttcttgTTCATGCCATATCATATTTCCTAATCTATAAAATAATCACTGTCACAACCCTAAAAGTAAAGCTGTGTCCCAAATGATGGATTCCATGACAAATTAGTGTCTTATTGCAATGTCTTCCATTttggctctgtcccaaatgctagaaTACATTTCTAGGTAGTGTTTGTACTAGAATATCCAGCATTTTAAGGCTCTGTGTAATGCAGTTCTGTCCTCGCAAGAGCAAGGACAGGGGCCCTATGGGACTGGGGGGGTGAAAGGGTTAAGGGAGAGTGGAACTATATAGGCTAACATGTCATTGATGCACATGTTGTATGcagtttttgtacatttataaattttcgTTTATGTTCACAATCCAGCTGCATGATAattacagttgtttttttttccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121581 lncRNA downstream 24108 21123315 ~ 21124955 (-) True G102691
TU121483 lncRNA downstream 145283 20995525 ~ 21003780 (-) True G102600
TU121291 lncRNA downstream 462878 20638871 ~ 20686185 (-) True G102458
TU121318 lncRNA downstream 567895 20578690 ~ 20581168 (-) True G102472
TU121286 lncRNA downstream 652762 20494257 ~ 20496301 (-) True G102453
TU121721 lncRNA upstream 59801 21309303 ~ 21312468 (-) True G102809
TU121720 lncRNA upstream 68638 21318140 ~ 21319552 (-) True G102808
TU121921 lncRNA upstream 320929 21570431 ~ 21652774 (-) True G102983
TU122044 lncRNA upstream 546271 21795773 ~ 21796243 (-) True G103099
TU122103 lncRNA upstream 974083 22223585 ~ 22224021 (-) True G103156
XM_026914175.2 mRNA downstream 11782 21127948 ~ 21137281 (-) True esrrd
XM_026913450.2 mRNA downstream 128522 21013235 ~ 21020541 (-) True blvrb
XM_026913492.2 mRNA downstream 135963 21006447 ~ 21013100 (-) False sertad3
XM_026913491.2 mRNA downstream 137826 21006445 ~ 21011237 (-) True sertad3
XM_026913548.2 mRNA downstream 219113 20924978 ~ 20929950 (-) True LOC113526481
XM_034305501.1 mRNA upstream 218472 21467974 ~ 21492481 (-) False LOC113526680
XM_034305500.1 mRNA upstream 218472 21467974 ~ 21492481 (-) False LOC113526680
XM_034305499.1 mRNA upstream 218472 21467974 ~ 21492481 (-) False LOC113526680
XM_034305498.1 mRNA upstream 218472 21467974 ~ 21492481 (-) True LOC113526680
XM_034305085.1 mRNA upstream 245620 21495122 ~ 21574846 (-) True ppfia1
XR_004578325.1 other downstream 135963 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 182153 20953602 ~ 20966910 (-) True G102566
XR_003402829.1 other downstream 1168804 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1798120 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2952257 18187447 ~ 18196806 (-) True G101178
XR_004578321.1 other upstream 985201 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 2341443 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 3374014 24623516 ~ 24711368 (-) True G104473
XR_003402792.2 other upstream 3503110 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 4135823 25385325 ~ 25548928 (-) False si:cabz01090165.1

Expression Profile