RNA id: XM_026914354.2


Basic Information

Item Value
RNA id XM_026914354.2
length 3715
RNA type mRNA
GC content 0.48
exon number 3
gene id znf296
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 24739091 ~ 24750597 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACACTGACGGGCAGAAGGCTGCGACCGTGACCACAGCCGGCGGAGATAACTCCAGAAGCCGACTGTGTagtttgggtttgtttgtttgtttgttttctgtatttgttttaagaCACCGTTTAAACCGGTAGTGTTCAGTCATTCAGGACTTCGTATAGGTATTTAAGAGCGACTAAAAGCCGGGGAGTGTGCACAAAACGCTGATAATGTCCAGGCGCAAACTTGGAAGCCGACCGCAACACCTGAGCGTGATTCAAGATGCCCCAGAGCTCAGCGTGACTTCGAGCTCACCCTGCTCTCCTGATCACATAGCTGGAGGCAGCGATCTACTGACATGCGGTCAGTGTGGTCAGGCCTTCCCTCTGGCTCACATCCTCACCTTCATCCAGCACAAGCAGGGAGGATGTAGCAGCACCAGGGCTGGCCCACTGGACCACACGCCTCAGTCTCCAGCCAATCATGCGTTCCGACGTGGCCCAGGCGTGCAGCTGGAAACAGGCTACGTGGAGTTGAAGCGGACGACAGGCAGGCGTTGGGAGGAAGAGCCAGGTGTGAAGGCGGAGCCTAGCCGAGCAGATGAGCCATCCAGTTTTACCTGCCtcgtatgtgagtgtgtgttgcctAGTGCGTGGGCTCTCCTCCAACAcgcccaacacacacactccctgagTCTCTACCAAGTCAAGGCCAATCACCCACAAAAGCCCAAACCAGCGGCCATGATGGATCCGCGCCACCTAGGCGCCACACTGGCTTCTGCCTTCCACACTTCTTCTGCCTTGAAACGTTTGCCGCGTTCCCATCAGCCCCAGAGCCATGCCCCTATGTCAGGAGGACGGAATATTCAGAGCCTGAACTTCTCAATGTGTCTGCAGCGGCTGGCTGAGGTGAGTGTTGGAAATGGAGGAGTCGTGCCCTCgccatctccatctccacccGCTGCTTCTCCTTTTCCTCACTCTAACCCTCCATTGCTAGGCGCCTTCTCCTGTGAGGTCTGTGGCCAGAATTTCCAGTCCTTGCGCAGCCTCTCTGCTCATCGGCGCACACATGCCACTGAGAAGCCTTACCATTGTGCTGTGTGCCAGCTCTCCTTTGCCCAAAGTGGAGAGCTAGCTCGACACATGAGGAGCCACCGAAAGGTTCCAGAAAGCTCATTAAAATTGTCAGAATGCTCATTAAGATTGCCAAATTTTGCTGTTGCCACCACAAACGAGGATGGGAAAGTCCCAAGCAGGTTTTCTCAGCAGGGATATGGGGATGGGGGGCATCAGGAAGGTGACCCTGCAGGTACAGGTTTGGTCCTGTTGGCATCCCAGCCGGGAGGAGCCAACCGCAGTTTGCAAAGGTACTATCAACTTCAGGCGGACGTAGACGAGGAGGTGCAGGTGGAGCCGCAGCATCCTTCACCCTATGGCAGCCCTTCAGAGGGCTCGCTGGACAGCGGAGAGACTGGTGAGAGTGGCATCGCCAGCGGCAACTGTACTCCCAAGAGGCCTGAGCGAGACAACGAGAGAGAGGGCGAGGTGGAGGCAGAGGTGGAAGGCGTGGATGTGGTGCAGGATTGGCAGCAGGACAACGAGAGACGCCAGTCTGCTGGTCgcaagaagaaagaagaggcATGTGAATTTTGCGGCAAACGATTCCGCAACAGTAGCAACTTGACTGTGCATCGGAGGAGCCACACAGGGGAACGGCCATACCGTTGCGGTTTGTGCAGTTATGCCTGTGCCCAGAGCAGTAAGTTGACACGCCACATGAAGACCCATGGCGCCCGTGGCACCCGTGCCCCCTTCCAGTGCCAGCTCTGCTCTGTGCCCTTTACTGTCTATGCCACACTGGAGAAGCACCTGAAGAAGACACATGGTATTAGCCATGCCACAGTTGGAGCCTACagccagaacacacactctctaagcCCTCCTCTTGGATACACCAACCTTGCCATTAAAATGGAGGATGATCCTACCATCGAGCACACCGAAGCCCCAGTCCAAACAGTCACAGAGGTTGTGGAGACATCCAAAACTCTCAAAGAAGAGGAATCTGAGATGATGGTCACAACTGATGGTGCTCCCTCACCCACTCCTGAAGATGCCAGCCATAAAGTAGAGTTGAGTCTTCCTCCAAGCACTGCCTGAACATCGAGGAATCATTCAGGGATCATACTGACCACAGCCAGCACACTAGATGCTTGGATCTGATTCTACCCATCCCCTGGTCAATATCACCCTCAATAACTGAGGCACCAAAACCATGTTTTGATGAATAGGAGCCACGTTCTGGGGTTGATCAGCTATCCTAGATCAGATTACAATCAAGTGCCTACATGTAGACAACTGTGACCATTCCTGCAAGGAGTCGGGACTCGGtatgatatttaaaatgttttgcactCATTACGGTGAGTGATTTGACTTGTGATAGTCCAGTCTGTCCAGGATTATAGAGACAGCGTGATGCCTTTCAGCCCCAGAAGAAGACAGGTGAATCAGCTTAGAGCATCAATGGCCAAGAAAGATCAAGATTGTCTGTACATGATTCTTAGTAGTTTTTGTTTTAAGATTCTTAGAGGTTGGTTATTTGTAACGAGCTCTGTTTGTTACAAGAAATTACACACTCAATTTTAGTGACTCTTAAAGTCAAATTGACATGGAAAGTGAGATTTTTGTAATGCTCTCTTTCCCCAACATTTTTGAGAGAATTATACTGGcaatggggattttttttttttttttgctggtttcAACTGAAAATCCTTTTAAACTTAGAAACATTCTTAATCTGTGTCCTGAACACTGGACCTTAATTTTGGGATACTGTTAATAATCAGCACAGTTTGGGTATGTGGCAATGAGCATCAACAATCATAACACAGATTTCTGTGTTCCTAATCTCAAACATGTATGGCAATGTCTTAGGGATCTTTGTAAATGTATCTGAAGTCATCGCTTACACATTCTGTTCATTGTAACCGATTCATCTCAAAACCTCTAGCTGCTCTTCTATGCATAAAgcttaattttataattaaaaagaaacgGGTGTCTGTATGCTTTCTGTTTTGTCTGTATTGCTGTTTACAGATTAATGTTCTGTTTACAGGTTATGTTTGTTTAACTGCATGCCATGAAACTTTAAGCTGTCTTTTGCTCTGTGTCTTTTCGTGGGTGCTGCATGTTGTGTGAGTGCGCAAATGAAAAGCCTTGCTTCAGAGGAATGACTGGGTGGGGAACAGCACTGACCTGTTGCCTGGAGAACCTGCTGTGTgagcacttgtgtgtgtgtgtgtgtgtaaatatacataTGGGTTAAAACGTGTCTTATTGTATGTATGCAGAAgatgtttattagtttattttctaTGATTATTGATGTCTGTAATCTATCAGGGAACTGTTTGACTGTTTtcttttaagtaaaaaatacaGTTCTGACTATTTGAATATAGACAAATGTGAAAGGCCGTTGGGCACAACAGTGTCCACCACTTCAGGGAATGACACGCTGTACATAGAGAGCTTCACCCTCCCTAATAATGATGATCCAATTTGTTGTTTGCTTCATCTGTATTGATTTCAGTTATATCtgttatgtatgtataatattttcCCCCAGCATTCCATGGGAAGTACTTTTGCTGTAAAGCAGCCATAATTTTGTTATTCTGTGCCTGTGCAGGTGAATATTAAAAGACTGATGCAAAGTCAAaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU123618 lncRNA downstream 77743 24631658 ~ 24661348 (-) False ttc9b
TU123452 lncRNA downstream 204672 24533737 ~ 24534419 (-) True G104320
TU123423 lncRNA downstream 255019 24480361 ~ 24484072 (-) False sipa1l3
TU123422 lncRNA downstream 255019 24480391 ~ 24484072 (-) False sipa1l3
TU123411 lncRNA downstream 274513 24414900 ~ 24464578 (-) True G104291
TU123851 lncRNA upstream 293189 25043786 ~ 25079487 (-) False tmem91
TU123870 lncRNA upstream 363380 25113977 ~ 25151156 (-) False G104694
TU123871 lncRNA upstream 395763 25146360 ~ 25151156 (-) True G104694
XR_004578344.1 lncRNA upstream 441460 25192057 ~ 25214790 (-) True LOC117597583
TU123929 lncRNA upstream 488513 25239110 ~ 25241770 (-) True G104747
XM_026913398.2 mRNA downstream 12069 24705004 ~ 24727022 (-) True capn12
XM_026914380.2 mRNA downstream 52841 24681764 ~ 24686250 (-) False fosb
XM_026914377.2 mRNA downstream 52842 24680767 ~ 24686249 (-) False fosb
XM_026914376.2 mRNA downstream 52842 24680767 ~ 24686249 (-) True fosb
XM_026914480.2 mRNA downstream 64250 24667061 ~ 24674841 (-) False c6h19orf47
XM_034305359.1 mRNA upstream 1056 24751653 ~ 24764161 (-) True clasrp
XM_026913845.2 mRNA upstream 1056 24751653 ~ 24764161 (-) False clasrp
XM_026913843.2 mRNA upstream 1056 24751653 ~ 24764160 (-) False clasrp
XM_026914366.2 mRNA upstream 16978 24767575 ~ 24776782 (-) True siae
XM_034305516.1 mRNA upstream 274220 25024817 ~ 25034882 (-) True bckdha
TU123617 other downstream 27723 24623516 ~ 24711368 (-) True G104473
XR_004578330.1 other downstream 1128643 23590945 ~ 23610448 (-) True mmp23bb
XR_004578321.1 other downstream 2432322 22234703 ~ 22306769 (-) False si
XR_004578325.1 other downstream 3725991 20995341 ~ 21013100 (-) False sertad3
TU121422 other downstream 3772181 20953602 ~ 20966910 (-) True G102566
XR_003402792.2 other upstream 2015 24752612 ~ 24762781 (-) False clasrp
XR_003402763.2 other upstream 634728 25385325 ~ 25548928 (-) False si:cabz01090165.1
XR_003402762.2 other upstream 634728 25385325 ~ 25548928 (-) True si:cabz01090165.1
XR_003402764.2 other upstream 634728 25385325 ~ 25485121 (-) False si:cabz01090165.1
TU124615 other upstream 1488733 26239330 ~ 26241005 (-) True G105376

Expression Profile