RNA id: XM_034305533.1


Basic Information

Item Value
RNA id XM_034305533.1
length 8870
RNA type mRNA
GC content 0.54
exon number 17
gene id gse1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28467758 ~ 28711935 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTTCCCCAAGCGGAGAATGAACGACGAGGTCGGCGATAAGGACGCGGTTGCTGTGCCGCGGAAGCACCGACTCATGTCCGCGGTCCACGGAGGTGCATCTCCCGGGCTCGCGTGCAGACCGGGTCGCGTGCCGAACGGCGTCTCGTTGGTGCACTGCTTCATATGCGGCAGCGGAGTGACGCCGGGCAAGGAGCTGCAGCTGCAGGTTAAGTTCCGGCACGGGAGCACGCCTTTCTTTCCGTTCTTGCAAGGCCAGGAGCCGGCACCGGGCGCCGCGGAGGTCGGCGCCGACGGGCACGCGCTCGTGTGCGCCGTGTGCCACTGCTTCCTGCGCGAGCAGTGGAACGCGTTCGAGCGCAGCCGCACGCCGCTCGACAAACGCGTGTACTGGCTCAAGAGACCGCACCAGTGCGACGCGCGCCGCGCGCCCCGGGACTGGAACGCGGCGCGAGACGCGGACGCCAGACCGTCCGTGAGCGGTCAGAACGGTGACGGCGACGGCGACGAGTCGGATTTCTCGTCGTTCTCGGATAACGAGCAAGCCTCGGATCAAGACTCGGATGCCGCAGACAGGGGAGGAGGAGTAGAGGAGAAAGGGAAGTGCCTCAAAGTTCCCGCTGCCGGTAGAGCGTGCAGGGACGGCGCCGGGATTAAGAGCAGTTCCGAGTCACAAAGCGCTGCGCGTTACCGGGTCGGTGTTTACAACACTCAGGACGCTGAGAGGTCTGAGAGCGCGCTGCTGTCTGGCTCTGTGATGATGAATCACGTGTCGCAGACGACGTTGGCATTGGCACGGCTCCACGGGAACCTGGCACGGCGTGATTGTGAGAGCCCTTCCGGTGACACACCCACCCAGGACGGAGGGATTGTAATGCGGGACAGACGAAGCGGCTGGAACTCCAGGCTGCAGCAGCTGCTCTTCGGCCCTGGTGAGGATATTGCACACGCACATGCCAAAGAAGCCGGGCTTAACCAGTTGTGTGACTCGGAAGCATCTGATGGCAACGAGATTAATGTAACAAGTGATGAAGATAAGGAGGATGAGAGGAAAAGACAGCAAGTTGGATACCAGGTTATGGGCAGACACGTGTGCTACATCTGTGGCAGTGGACTTCTACCGGGCATTCGCTTCGAAGTGTGTGTACAAAAGCAGGAGAGAGCTGCCACTGAGCCTTTCTTCCCCTTCCTGTGGCTGCACACACCTCCGCCAGACGCACTGCCGATAAGCCCAGGAGGCCGCACGCTAGTGTGTGCCAGCTGCCACGCGTCACTTATGCAGCAGTGGCAGGGCTTTGAGCTGGCGGATGTACCTGTCCTGCAGCGTCTTTATGTAGTGCCAGTTAACGTAGGTGCCACAACGTCGCCCGATATGGATGGCATCGGGTCTTTACCCAAAATTCGCCCTCTCTCTTCTATACATCCTCCCAGGGAGGCCTGCTATTTATGCGGGCAGGACTGTGCCCAAGACATCAGGGTGGCATATTCCCGCGCAGGGGTAGGAAAAGCCCGTGGTGCCATGTACTTTCCATTTATCAACCTGCTTCCATGCCCACCCAACGCCCAAAGCATGCGAGATGGCCAAGTACATTGCTGCGCCACCTGTTACACCATCTTAGAGGACATCTGGGCGGCCTACCATCTCTGCCTTAGTGAGGAGCTTATCACTTCCGTCAGCACCTTCCTTGGGAGATATCACCAGACCACTACTGCAGGTGGAGTCTCAAGCAGCCTTGTCAGAGCACAGGAGAGCATTTCTGCGTCCCTTCACCACACCTCCGTGTGCTACCTGTGCGGGGCGGAGCTCTCTGCAGGCACAGAGTACCAGCTTCATGTGAATCCTCCTGGACGATGCGGAGAGAAAGAGCCCTTCTTCCCTTTCCTCACCGTGCATACACCGGCCCCTCGCGCCCGCCCTGCGGATGCCACCGGCCTGGTGGCTGCTTGCTCCCTGTGCTATCATGACCTGCTGGCTCAGTGGGCGCAGCACGAGGCTGCAGGATCAGGGCCCTCTAGCAGCCCCTGGTCACGTCAATACAGCTGCGAATCTTTTGTCTGCTTTTTCTGCAGGCAGGAGAAGAGGAGGGCGCTGGGTTTGAGGGCAGTCACCGTCGCTCGGCTGCCCGTCTTCCTCTATGCCCCACGCGTTAGCCACACTCTTGTGGTGGATGATGGGAAACAACTTACAATTGGCTCGTGTGTGGAATGTAAATCCATGGTGTTGGCTGGACAGAACATGCAGCAGGATGGCACGCTGGACCGTGGAAGACCAGCAGGGACTAAGCAGAAGAGCTCCACAGTGGAAGAATCGGCCGGGAGCAGTAAAGAGGACGCTCGACAACCGAGTGCACCGGTGAGGGAGGTTTCCAAGCATGTTCATGCTCCATCTGGGGAATCTAGTATCACCTTCACAAGATCTCATCTCTCAAGTGAGGACAGAGATCGATCACCTTCTAGCATGAGCCATGAGCCGAAGTCGCCCTCACTAGGCATGATCTCCACGGCGACGCGCACCACGGCGACGGTCAGCCCGCTCACGCCGTCGCCCCTCAACGGCTCCATCGTAGCCAATGGCAGCCCGGCTGCTCAGTCTACTCACTCTGGATTCGCCGCTGCCCTCCGCAAGCTGGCCAAGCAAGCCGAGGAGCCTCGAGCAGGTTCCTCCATCAGTAGCGAGTCCTCCCCTGTCTCATCTCCAGCCACAAACCAGAGCTCTCCAGTGAGCACGCCCAAGCGCGGTCCCCTCGGCCCGGTCATAGTGCCCCCTGGAGGCCACAGTGTGCCCAGCACCCCACCGGTGGTCACCATCGCCCCTACCAAAACAGTCAACGGCCTGTGGAGGAGCGAGAGCCGCCCTGTACGAGAGTCAGAGTCGGGCCCTCGTGGTGTCACTAGAGAGCGTTTGGCGCCTGAGGCTCAGGAAAAGGGCGGCCCCTCTGTTCCTGCTCACCTCATAGGAAATCCGTACGCATTTGGCCTGACGTCTGGGTCTGTGATGCAGGATTCACGCTTTCAGCCCCTGAACAGCCTGCCAAGGCAGATTCCCCATGGCGTGCCCCCCGCCGGAGTACCAGAGGAGTACCTGCGTGGTTTCCGTCCCTACGCCACAGCCGAGGACCTGCGCATGCCCTCACTGCCCCTCGGCCTGGACCCGGCCACTGCTGCAGCCGCTGCCGCTAACTATTATCACCCCAGCTACCTGGTCCACCCCTCGTTCTCCCCTTACAGgATGGATGATCCTTTCTTGTCGGCACTGAGGTCTCCGTTTTATCCTATACCTGCAGGGGGCGCTCTGCCCCCACTGCACCCGTCTGCTGTGCCCATGCACCTCTCAGGGGTGCGTTACCCTGGCGACCTCAGCCATGCCTCGCTGTCCAGTCTGCAGTCTGAGagGCTCCAGATGGAGGATGAGCTTCGTCAGAGGGAgcgggagcgagagagagagcgtgagcgGGAAAAGGAGCGGGAGCGCGAGgcagagcgagagaaagagcgagaaagagagagggagcgagaaagagagagagaaaaggagcttgagagagagcgagagagggagagagaaagagaaagggagcgtgagagagagaaagaaagagagcgagagagggagagagagagagagctggagagacagaaggagagagcaGCACGAGAGAAGGAGCTACAGGTGTCCAAGGCCATGGAGGGTCACTACCTGGCTGAGCTCCACGCTCGGAGAGGCCAGGCTGAGGAACGAGCGAAGGCCGCCGAGAGGCTCACTCCCAACAGAGCAGATAAAACCAAAGAGCCTGCCCTCCCTGCTCCTAAACCAATCCAGGCAGGCCTGCACCCTTCACTAAGCTCCTCCCACCACCCGGTGCCCACCTTGCTTTCCGCACACGGCATGTACCTCGGACCAGGAGGGACGGGACCCGGGGCTCTGACGCCTGCCATGATTCTCCAGCGCAACAACGAGGAGGAGCGGTGGCTGGCTCGGCAGAGGAAATTACGGCAAGAGAAAGAGGACAGACAGTACCAAGTGTCCGAGTTTCGCCAGCAGGTTCTGGAGCAACATCTAGACATCAACCGGCCAGGAGAGGCGCCTGAGCTACGGAACGAGGGGCCGAGGCCCATCCAAAACCACCATGAGGCCGGCAGCAGAGAGCGTGACCGAGAACGGGATATCCACCCCCACCTCGGCGCTCCTCCACCTCTTATCTCCCCCAAACCCCAGCCCAGAGACCACGCCCCTGCACCACCCACCACCCTCTGGAACCCCGCCTCACTCATTGAGACCTCCTCTGACTCACGGCGGCCTCTCCACGAGCCGCATTCAGGTCCCTACGACATCAGCCGCCTCGCTCCACCTCTGCCCAAAACCGAGCGCCATTTCAGCTCGGAAAAGCCCAAAGAGGGACACGAGAAGTTCCCGCTCATCCGACCGACAGGGTTCTCCGAGCCCCGCCCTTTTCTGGCCGAGCTAGAGAAATCCACACAGTCCTTTTTAAACCAGCAGAGGGCGACGCTGAGCCTGAGCACACAATACGGGGAGCTGAGTGGTACTCTGAAGAACAGTGCAGTCCATAAGGGCCTACAGGGCCTACCACCGATGAGGCCAGGAAGCGATACCACGCTTGTGTACGATGAATATCTGCAGCTGCATCGACGGCCGATTAGCAAACTGGAcctggaggagaggaggaggagggaagcAAGAGAGAAAGGATATTACTACGAGCTGGATGACTCGTATGACGAGAGCGATGAAGAGGAGGTGAGAGCTCATCTCCGGAGAGTGGCCGAGCAGCCGCCACTCAAACTGGACGACTCCACTGAGAAGTTGGAGTTTCTGCGGCTGTTTGGTTTGACCACCGTGTCTCAGCGAGAAGAGCTGTTGGAGCataagaggaggaagaggaggaggatgctCCGGGAACGAAGCCCCTCGCCTCCGGCTGTGGCCAGCAAGCGCCTGCCTCCTCCACTTAGCACCCGCTTTACTCCTGAGGAGATGGACAACAGCCCAGAGCTGGAGGCCAAGAAACGCTTCCTCACCATGTTCAGCCTCAATCACCTGAGCACGCAGCAGAGGAAAGACCGTCGCAGCTCTCCCATCTCAGACGAGGCTCTGAAGTGTGTTTcctttatttctgcatttccgacagagaatgagagagtggTGGAGCTGCTGCACGCCATTAAACAGAAAAGTGTGACTCTAGACACCATCAGGCATAATCCTTTCCCGCTGTGCAAGAGCCCGCTGCTCCATCAGTCTGATTCATCCTCATCCCAGTCTCCAGGCCGGTCAGGTGAGTTAGTCAGTGCCAGACCCCCGAGTCCTCCACCTCCGTCCACTGGACCTCCAGCTGAGCCTTCCTCCGCTCCACCTCTCGAGCACCTCAGACCTGTCACTGAACCGCTCAGACCAAAGGACACTCCCCTTCCCCTGTCATACGCTGATAAAAACCGAGGCAGTGACGTAATCCTCAGCAAAAAGCCCTCGAGCCTGCTGAACAGCGTGCGTCCTCCTGCGCACCCTAAAGATGGCGCAGGCAGCCTGAACGGCCGGAGCAAGACGTGGGAGAGCTTTACGGCCGAGGAGTTCGCCCAGCAGTTCCACGAGTCGGTGCTGCAGTCCACTCAGAAAGCACTGCAGAAGCATAAAGGTGGCGCCTCGGCCATCTCTGAGCCCAACCACACTATGGACTCCACGGTGCACTACAACATCCCGGAGCTGCAGAGCGGCGCGGGCCGCagcacacaccctcacacacaccctgcactCCAGCCCAACGGTCTGCACTGCCCACCTGCAGTCCGGCGAGACGGGCCACCACGCCCCGAACTCTCCACCGAGGAAGACTCAGATGAAggggatgaggaagaggaggaagaggaagaggctCTGGGACACAGGTGGAATGGGATCGAGTCCATCTTCGAAGCGTATCAGGAATATGTTGAAGAGCAAAATATCGAGCGTGAGGTGCTGCACAGTCAGTGCAGGAAGCTTGAAGCCCAACACTACAACCTCAGCCTGACTGCTGAACAGGTCTCTCACTCCATGGGGGAGTTGATGGCTCAGAAGCAGAAGCTGGCGGCTGAGAGGGAGAAGCTGCAGGCCGAGCTGGAGCACTTCAGGAAGTGTCTGACCATGCCACATACGGCCTGGAGCAGGGCTCACTTCAAGGGATATCCTCCCAGGTGACATCCCCCTGAATCACCTGAGCTTCATCCACCCCCCCTCCTTTTCCCTCTATTCTAACGCCCAGACTCCAGCCCCCTCTGGTCCTCCACAACAGAAAGAGGGCGGAGGTTTGGAGAGATGGTGCACTGTGAGCACACTGAGAAGGACTGATGTTTAAACGCCAAGCCCACAATCTGACATTAAATGTGCCATCGAGGTGTAGGACAGGTGCCACGCCCACTACCAACCAACCAACCCTCATGGATCTCGCAGGAACGCTCGgtccataacacacacacccacacaggtacacacagcGGTCCACGCCTCACTAGGACGGATCATGTAGACAAACTGAATGGTCATGTGACTccccaaaatatatatatcgtCGTGGCAACTGCACCATCTCACCTGGAGATCTGAGGAGCTTTCAACTGGAAATGCACTTAAGAGAAAACCCAGAACTACCTGGAGGTACTGTGTTATAACAAGGAACTCCTTTCAAAATTAGGGAAGaacttcaaaaataaaatgcacatttttgttgtgggggaaaaaaaactaaaaatgttaAGGAAAGTTTTATTCAAGAAAAAATTTTTAAAGAGGTGCTTCAGCCTTGTATTGTAAATATCGAAACAAAATGGAAAGgaatttttgtatgtttttattacttACGTTAATTGTtctttgaagaagaagaagaaaaaaagaagcctgccatttttaaaaaaaaattatgcacatGCTTTTTAGGGCGTTAAGCTGGAGCCTTGCTTTTAGTGTTTGTATTGCTGCTGGTCAGGATAAAGGACGGAGGAAGAACTCGGTGCACACCTCcggtgtacgtgtgtgtgtgagagtgtgtgagtgtgtgtgtggcctacCACAGTAGCATCCGTCCCCAAAGGCAGCGCCAGGTCGAAAGAAGAGCAGAACGTCACCACTCTCCCACTCCCTGCACTCTGGACTACTATCGTAGGCTCATgaccatttaatttttttattataatgttttttttttttacattttatggtgAACCAGCACGCATTCTCTGCATTCAGCCCCTTTTTTGTGTCTTAGAGTTCGTGTAACGGACATTTAATCAGTGAGTACTGTGCCAAAGGTACCCACAGAACCACAAATCCAAATCATGCCATTAGAAACGCAAGAGCTGACGGCCAAAAAGGCTATTTCATATCAATGCTAAGCTAACTGTTTTCACACAGAGTGTCAAATGTTGCAAGATTCGCTCTAATATCGTTAATTAGCATCAAATATAATCATATTAATCACAGGATGTTTAAGCGCAGTGCCTGTGTGTCCTCAGgttaaaattactttaaaaacacacacacacacacacacacacacacaataaaatgtaGCCTATAATCTGTGTAAACCACAAATTATGTTCTACCCTAAGTAGTGAGCATATACAGTGAACAAGACGCCATTTTGGATTTGGACGTACGTGGCTCCTGACTGAGCCAAATATCAAAGGGCCTACAAAAGGGTTCGGACTTGTTTTATGTTCAGTTTAAACTCATTAACTATAACCAATGATTTGAAAAATgaattgtttaatatgttttgtaACACTAGAGAACCCACTAAAATGACCAAGGAACATCTCTACACCTTTACTCCTAATTAATAACGCCaggatctatgaatatgcatgatatgcaaatgagaaacaCCCCCACATCCTCCTGCCATCCctaatagctagctggctagataattaatataaaaatatagctaATATTACATCCTCATCCTTTAATAACTCGCATATTGAACGTGATTGGTGCAAAGCTATGGATCTgatagtgacatcacaaacataGCTCCGCCCATAgattagttttatacagacatttttatatAGACAAATTTGAATGAAACACTGATCTATATAAGGATAAAATGTTACTCAGATTTTTTACGGATCTGCGTTTATGCTTTTAGGTATCCTCGACCCAAAGAATCATAATCAGCTCGCTCAAGTGATTCATCCGATTCAAAAACATTGTGATTCTTTATCCTAAATGCTAGCTTATTAATGCTAGCCTGTTTTATCTCCTAATCTACCAGTTCTGCCATGTTACTCGGCGTCTCCGTTTACATTCTCGTCCTGTCAGCAGTAGGCCAAAGCAGCAGCCGCGATTAGCAAAGGCTCACAAATAGCAGGctttacatttttcacaacGTTAATAATCGGGTTGTTCAGCTCATCACAGGTTCATGTTATTAGCGCTCAGGCTCACAGGATGGACCGCTTCTGGAGGCGGTTCCATGTTTACAGACCCGAGGCTGGCCCTAAAGCGCATCCATCATGtgcacgtgtgtatgtgtgtgtgtgtgcgcgtgtatgtgTGCTTGAGCGAGCACTACCACTGCCTGTCCAGGAGCAGGGacacgccctctctctctctctctctctctctctctctctctgtctgtctctcagtgtctctcgcCCAACTAGCGCACGCACATGCAGTAGCCGCCCCCCCCAAACCCAATGGAGGATGTCTAGATGCTgtgaaatcatgtttttaaggaaaaaaatgtacttgTTTGAAttcaatgtaatgtaatatattctTTGTTGAATGTAGTAATTAggtatttatgaatatattgctgtaatttcagacaaaaaataaaatgcttcagaactgaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578301.1 lncRNA downstream 206454 28259697 ~ 28261304 (-) True LOC117597514
TU125776 lncRNA downstream 369764 28097773 ~ 28097994 (-) True G106356
TU125726 lncRNA downstream 388883 28038090 ~ 28078875 (-) True G106319
TU125749 lncRNA downstream 396888 28069599 ~ 28070870 (-) True G106336
TU125671 lncRNA downstream 499557 27967982 ~ 27968201 (-) True G106269
TU126166 lncRNA upstream 49583 28761518 ~ 28761737 (-) True G106705
TU126180 lncRNA upstream 52804 28764739 ~ 28779018 (-) True G106713
TU126243 lncRNA upstream 93098 28805033 ~ 28805430 (-) True G106772
TU126422 lncRNA upstream 490072 29202007 ~ 29202844 (-) True G106951
XR_003402809.2 lncRNA upstream 561142 29273077 ~ 29280183 (-) True LOC113526826
XM_026914421.2 mRNA downstream 15443 28448739 ~ 28452315 (-) True LOC113526963
XM_034305449.1 mRNA downstream 20820 28430071 ~ 28446938 (-) False dusp22a
XM_026914419.2 mRNA downstream 20845 28423797 ~ 28446913 (-) True dusp22a
XM_026914417.2 mRNA downstream 44773 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 234371 28229438 ~ 28233387 (-) True foxf1
XM_026913748.2 mRNA upstream 57690 28769625 ~ 28774040 (-) False LOC113526572
XM_026913747.2 mRNA upstream 57690 28769625 ~ 28774030 (-) True LOC113526572
XM_026914369.2 mRNA upstream 70089 28782024 ~ 28790810 (-) True atmin
XM_026913490.2 mRNA upstream 79856 28791791 ~ 28799363 (-) True cenpn
XM_026913456.2 mRNA upstream 96172 28808107 ~ 28852636 (-) True LOC113526432
TU125182 other downstream 1310618 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1859429 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2226753 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2918830 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 990217 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1631596 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2018023 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2104644 30816579 ~ 30819614 (-) True G107803

Expression Profile