Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026914380.2 |
| length | 1309 |
| RNA type | mRNA |
| GC content | 0.59 |
| exon number | 6 |
| gene id | fosb |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 24680767 ~ 24686250 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU123618 | lncRNA | downstream | 20416 | 24631658 ~ 24661348 (-) | False | ttc9b |
| TU123452 | lncRNA | downstream | 147345 | 24533737 ~ 24534419 (-) | True | G104320 |
| TU123423 | lncRNA | downstream | 197692 | 24480361 ~ 24484072 (-) | False | sipa1l3 |
| TU123422 | lncRNA | downstream | 197692 | 24480391 ~ 24484072 (-) | False | sipa1l3 |
| TU123411 | lncRNA | downstream | 217186 | 24414900 ~ 24464578 (-) | True | G104291 |
| TU123851 | lncRNA | upstream | 357536 | 25043786 ~ 25079487 (-) | False | tmem91 |
| TU123870 | lncRNA | upstream | 427727 | 25113977 ~ 25151156 (-) | False | G104694 |
| TU123871 | lncRNA | upstream | 460110 | 25146360 ~ 25151156 (-) | True | G104694 |
| XR_004578344.1 | lncRNA | upstream | 505807 | 25192057 ~ 25214790 (-) | True | LOC117597583 |
| TU123929 | lncRNA | upstream | 552860 | 25239110 ~ 25241770 (-) | True | G104747 |
| XM_026914481.2 | mRNA | downstream | 6908 | 24667061 ~ 24674856 (-) | False | c6h19orf47 |
| XM_026914480.2 | mRNA | downstream | 6923 | 24667061 ~ 24674841 (-) | False | c6h19orf47 |
| XM_034305321.1 | mRNA | downstream | 7057 | 24667061 ~ 24674707 (-) | True | c6h19orf47 |
| XM_026913281.2 | mRNA | downstream | 19786 | 24631639 ~ 24661978 (-) | True | ttc9b |
| XM_026913529.2 | mRNA | downstream | 107089 | 24480302 ~ 24574675 (-) | True | sipa1l3 |
| XM_026913398.2 | mRNA | upstream | 18754 | 24705004 ~ 24727022 (-) | True | capn12 |
| XM_026914354.2 | mRNA | upstream | 52841 | 24739091 ~ 24750597 (-) | True | znf296 |
| XM_034305359.1 | mRNA | upstream | 65403 | 24751653 ~ 24764161 (-) | True | clasrp |
| XM_026913845.2 | mRNA | upstream | 65403 | 24751653 ~ 24764161 (-) | False | clasrp |
| XM_026913843.2 | mRNA | upstream | 65403 | 24751653 ~ 24764160 (-) | False | clasrp |
| XR_004578330.1 | other | downstream | 1071316 | 23590945 ~ 23610448 (-) | True | mmp23bb |
| XR_004578321.1 | other | downstream | 2374995 | 22234703 ~ 22306769 (-) | False | si |
| XR_004578325.1 | other | downstream | 3668664 | 20995341 ~ 21013100 (-) | False | sertad3 |
| TU121422 | other | downstream | 3714854 | 20953602 ~ 20966910 (-) | True | G102566 |
| XR_003402829.1 | other | downstream | 4701505 | 19980069 ~ 19980259 (-) | True | LOC113527007 |
| XR_003402792.2 | other | upstream | 66362 | 24752612 ~ 24762781 (-) | False | clasrp |
| XR_003402763.2 | other | upstream | 699075 | 25385325 ~ 25548928 (-) | False | si:cabz01090165.1 |
| XR_003402762.2 | other | upstream | 699075 | 25385325 ~ 25548928 (-) | True | si:cabz01090165.1 |
| XR_003402764.2 | other | upstream | 699075 | 25385325 ~ 25485121 (-) | False | si:cabz01090165.1 |
| TU124615 | other | upstream | 1553080 | 26239330 ~ 26241005 (-) | True | G105376 |
