RNA id: XM_026914381.2


Basic Information

Item Value
RNA id XM_026914381.2
length 3457
RNA type mRNA
GC content 0.52
exon number 26
gene id wdr59
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 27825324 ~ 27846822 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGATGTCATTTGTTGATGTTTTAGTGGGAGAAACATGGCGGCCCGGTGGAGCAGCGAGAATGTCGTGGTGGAGTTTAGAGACGCTCAGGCTACTGCGATGTCAGTGGACTGTCTAGGGCACTATGCTGTTCTTTCTGGGAGACGTTTCTTGTATGTTGTGAACCTGGAGGCGCCGTCAGAGGCTCCTCGAAAAATAGGCCGTCAGAGCAAGTGGGATGTCGGCACGGTGCAGTGGAATCCGCACAAGACAGAAGCTCATCTATTCGCAGCATCAagtaATCAGCGTGTGGACCTGTATGTATGGCGTGATGGATGTGGAGAGTCTCACACGTCCCTACAAGGCCACACACGAGTTATAAGCGATTTGGATTGGTCATGGTTTGAGCCAGAATTTCTCGTCACAAGTTCAGTAGACACCTACATCTACATATGGGACACAAGagacACACGTAAGCCTACAGGAGCTCTATCAGCAGTGGCTGGAGCATCTCAGGTGAAGTGGAACAGAAAGAATCAGCACTGCTTGGCCTCTAGTCACGACGGAGACGTCAGGATCTGGGACAGACGGaaacccaacactgctgtTGAATACGTAGCCGCTCACTTATCTAAGATTCACGGCTTGGACTGGCATCCTGACAACGAGTATATACTGGCAACCTCCAGCCAGGACAACTCAGTTAGGTTCTGGGACTACAGACAACCTCGAAAATACCTCAATATCTTGTCCTGCCAAGTTCCGGTTTGGAAGGCCAGATACACTCCATTTTCCAACGGGCTGGTGACGGTGATGGTGCCGCAGCTCAGGCGGGAGAACAGCCTCCTGCTGTGGAGTACGCTGGACCTCAACAGCCCCGTTCATGCCTTCGTAGGTCATGACGACGTGGTGCTCGAATTTCAGTGGAGACCTCAGAAAGAagGATCTAAGGACTGCCAGCTTGTCACATGGTCCAGAGATCAGACGCTTCGGATATGGAGGGTGGATCCTCAGTTACAGAAGTTATGCACCAGCGACATTGTGGAGGAGCTGATGGAAGGCATGACTCTCACAACAGAGTCTGAGAAGACACTCCGCTCCCAGGAACCTCCTCTGAGCCCCAGTCTAACTGCCGACGACCTGCAGGGTCAGTTCGAGGCATCCAGTGGCAGGCAGGACCCGGCTGGCCTCGCTCAGACTCTGCAGCAAGAGTTCTCACTGGTCAACCTGCAGATCCGCAACGTCAATGTGGAGatggatGCTGTGAACCGCACCTGCTTCGTCTCGGCTCACTGTGGAGCGAATCAGGTCAGACTGGTGGTGAAGTTTCCTGCACAGTATCCAAACAATGCTGCACCGTCTTTCCAGTTTGTTCCCCCAACAACCATCTCGTCCTCCATGAAGACCAAGATACAGAAGATTTTGACAGACACGTCACTTCAGAAAGTGAAGAGGAACCAAAACTGCCTGGAGCCGTGTGTGAGGCAGCTGGTGTCCTGCCTCGAATCAGACGCGGAGGACGGCACTAATCCCCATGTGTTCAGTAACTCGGTGAGCCCTGCTCTTCCGGCCTTCCCTCGTGTAACCAACACTTACGGCTCTTACCAGGACGCTAACATCCCTTTCCCACGTACCTCAGGTGCTCGCTTCTGCGGCACAGGCTCTCTGGTTTACTTCACTCGGCCCATGTCCATGCATCGCACTGTCCCTCCTACAGAACCTACACCTAGATCCCTCTCAGCGCTGTCTGCGTACCACAGTGGCCTTATGACTCCGATGAAAATGCGCAGCGAGTCTCAGTCCACGCTGCGGCTCTACAGCGGGAGTCCGACACGCACCGATAAAGAACAAGTGTCCATCTCCTCCTTCTACTACAAGGAGCGGAAATCACGGCGCTGGAAAGGGAAACGAGAGGGAACCGACTACAGCAATAAAACGATCAAACTGGCTGGTAAAGTGATCATACAGGAGATCTCCTGTCTCCTGCCCATTCACAAAGCCCTCGGAGAGACCTACGTattAAATATGAACGACATACGGGACACGTGTCAGAAGAATGCAgccgcagctctgacagtaggaCGCAGAGATTTAGCAAAGGTTTGGGCTTTGGCCTCTGCAGCGACCAGTCTCGACCTGTGTCCTGACTCCGATCCTGACGCTGACACTCCTTGGGCTCGACACCCTTTTGGGCGACAGCTACTGGAGACTTTGCTTGAACACTACAGTCAGATGAGTGACGTGCAGACTCTGGCCATGCTGTGCAGTGTGTTCAGGGGTCAGGGGATCCCTCAGGACTATTTCACACTGTACAGCCCACGCAGCTCCGGCTTCACCCTCCACCACTCGCGCTATCCCAGCTTCACTTCTAGCTCTGTGACGTCTGGTTCCTGCTCCAGTACCTCCGACTCCATCACCGCTCCGTGGAACATGGctGGACGGGATGCTGAACAAGCTCTACCGTGGGGAGAGTCCTCTCCTGACGACGTTCGCTACGCAAACCAGGCTTACACAGATCCCCGGGAACGAGAGAAAGAGCAACACGACATGAACAAAAGATTATTAGACCCGGCTAACACCTTGCAGTTTGACGACTTTAAGAAGTGTTACGGAGAGATTCTGCACCGCTGGGGGCTGAAGGAAAAGAGGGCAGAAGTGCTGAAGTTTGTTTCCTGCCCTCCAGAGCCACACAAGGGGATCGAGTTCGGCGTGTACTGCTGCCACTGTCGGAGCCAGGCCAGAGGCACTCAGTGCGCCGTGTGCAAGCGCTTCACCTTCCAGTGCGCCATCTGCCACGTGGCCGTCCGCGGCTCGTCCAATTTCTGCCTGAGCTGCGGCCACGGCGGCCACACGAGCCACATGATGGAGTGGTTCCGCTCGCAGGAAGTTTGTCCTACGGGCTGCGGCTGTCACTGTCTCCTCCAGAGCACTTTCTGAACCTCTTCTACACGGACCCGGACATGACGAAGGTCTCAGGGTGCGTCTCAAACCTCTCGGTACTGTAACAGAGCCTGgactgttgatttttttttttttttttttaataaacagcaCTGATACAGATCATGGATttctgtgctgctctgactaGACCTTTTATAATAGTGGTCTTCACAGTATGCAAGaaaccaagaaaccacaaacacaTGAGTTACAGTTTACACCAGCCTTATTCAGTAATAAttgctcataaaaaaaaaaagaagtgccATTTTTATGCAGTCCTGGTTCGGTTACATTGCAGGGTTTTCTCCTCAATCTGTGAACACCAACACGTATAGATGGACTGAATGTGCTGCTGATTTTACACTCACAGCTGAAAAGCGCCGTTTTGTATGTTGTGTTCTGTCTTTTCATTTGAAAAGAGAATAGCTAAGAACTGTGCTCTTGTGTAAGGGAGTAGTATTAAATGATTAACCAGCACCTACAAAGTTTATGCCctaaatgaagaaataaatttgtttaaataactGCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU125590 lncRNA downstream 43524 27779132 ~ 27781800 (-) True G106193
XR_003402778.1 lncRNA downstream 636532 27188342 ~ 27188792 (-) True LOC113526487
XR_004578372.1 lncRNA downstream 680450 27143707 ~ 27144874 (-) True LOC117597606
TU125118 lncRNA downstream 696152 27123277 ~ 27129172 (-) True G105842
TU125109 lncRNA downstream 717753 27105368 ~ 27107571 (-) True G105835
TU125592 lncRNA upstream 15018 27861840 ~ 27905029 (-) True G106195
TU125660 lncRNA upstream 97994 27944816 ~ 27945033 (-) True G106258
TU125661 lncRNA upstream 106696 27953518 ~ 27953990 (-) True G106259
TU125662 lncRNA upstream 107442 27954264 ~ 27954479 (-) True G106260
TU125666 lncRNA upstream 116949 27963771 ~ 27964010 (-) True G106264
XM_026913966.2 mRNA downstream 2098 27781821 ~ 27823226 (-) True glg1b
XM_026913968.2 mRNA downstream 2099 27781821 ~ 27823225 (-) False glg1b
XM_026913635.2 mRNA downstream 56521 27734339 ~ 27768803 (-) True si:ch73-386h18.1
XM_034304991.1 mRNA downstream 116553 27662408 ~ 27708771 (-) True otogl
XM_026914020.2 mRNA downstream 166487 27602226 ~ 27658837 (-) False ptprq
XM_026914111.2 mRNA upstream 8014 27854836 ~ 27859361 (-) True cog8
XM_026913761.2 mRNA upstream 18287 27865109 ~ 27878619 (-) True zdhhc7
XM_026913760.2 mRNA upstream 18287 27865109 ~ 27878618 (-) False zdhhc7
XM_026914328.2 mRNA upstream 79068 27925890 ~ 27939822 (-) True LOC113526894
XM_026913729.2 mRNA upstream 336711 28183533 ~ 28205626 (-) False LOC113526564
TU125182 other downstream 668184 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1216995 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 1584319 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2276396 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1855330 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 2496709 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2883136 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2969757 30816579 ~ 30819614 (-) True G107803

Expression Profile