RNA id: XM_026914421.2


Basic Information

Item Value
RNA id XM_026914421.2
length 756
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC113526963
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 28448739 ~ 28452315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gctcCGCGGTGTCGTATTTCCGGTCCGGatttcttccttcctcctttAGGTGGACGGCCAAAAGGAAAGAGAATGCTGGCAACTAGAGCTCTTCGTCTTGTTGGGAAGCGCGCCTTGTCGACTTCAGCGTGCCTGCGTGGCCATGgAGTCGCCAAGGTGGAGGACTACACCCTCCCAGCATATTTTGACCGCCGTGAGGTCCCCCTGCCTGAGATTAGATATGTCCAGCAACTGAATCCGGAGCAGAAGTCCCtcaaagagaaggagaagggcTCCTGGGCTGTGTTGTCCAACGAGGAGAAAGTTGCACTGTACCGTATCAGCTTCAAGGACAGCTTTGCTGAGATGGATAAGGGTACAGGGGAGTGGAAGACCGTGGTCGCTGGAGTCTTGTTCTTCATTGGCTTCACTGGCTTTGTCGTGCTGTGGCAGAGGAAATATGTTTACGGAGACGTTCCTCACACCTTCGACCCCGAGTACAAGCAGAAGGAGCTCCAGAGGATGCTCGACATGAGGATCAACCCCGTCGAGGGCTTTTCCGCCAACTGGGACTATGAGAACAAAGCTTGGAAGAAATAAATTGTCTTTAATGTTTTATCAGTGGACCACGTTACACAACTTCATGTTAAGTTTCAGTGTGCAGATCAGTGAAAAGTCGATGTATGACTTTGTCTATACCTCAATGAATGCGTCCTGGAAGACCACTTCCTCTTAAGGTTATTGTATActataaagagaataaaactcCCAACCATC

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001666 response to hypoxia biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02263 COX4; cytochrome c oxidase subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578301.1 lncRNA downstream 187435 28259697 ~ 28261304 (-) True LOC117597514
TU125776 lncRNA downstream 350745 28097773 ~ 28097994 (-) True G106356
TU125726 lncRNA downstream 369864 28038090 ~ 28078875 (-) True G106319
TU125749 lncRNA downstream 377869 28069599 ~ 28070870 (-) True G106336
TU125671 lncRNA downstream 480538 27967982 ~ 27968201 (-) True G106269
TU126111 lncRNA upstream 147804 28600119 ~ 28601535 (-) True G106653
TU126113 lncRNA upstream 151998 28604313 ~ 28605437 (-) True G106655
TU126114 lncRNA upstream 153943 28606258 ~ 28608041 (-) True G106656
TU126115 lncRNA upstream 156631 28608946 ~ 28609764 (-) True G106657
TU126118 lncRNA upstream 161952 28614267 ~ 28614543 (-) True G106660
XM_034305449.1 mRNA downstream 1801 28430071 ~ 28446938 (-) False dusp22a
XM_026914419.2 mRNA downstream 1826 28423797 ~ 28446913 (-) True dusp22a
XM_026914417.2 mRNA downstream 25754 28415135 ~ 28422985 (-) True irf8
XM_026913722.2 mRNA downstream 215352 28229438 ~ 28233387 (-) True foxf1
XM_026913729.2 mRNA downstream 243113 28183533 ~ 28205626 (-) False LOC113526564
XM_034305534.1 mRNA upstream 15443 28467758 ~ 28711935 (-) False gse1
XM_034305533.1 mRNA upstream 15443 28467758 ~ 28711935 (-) True gse1
XM_026914361.2 mRNA upstream 15443 28467758 ~ 28711933 (-) False gse1
XM_026914360.2 mRNA upstream 15443 28467758 ~ 28711932 (-) False gse1
XM_026913748.2 mRNA upstream 317310 28769625 ~ 28774040 (-) False LOC113526572
TU125182 other downstream 1291599 27152312 ~ 27157140 (-) False si:dkey-151j17.4
TU124747 other downstream 1840410 26569085 ~ 26608329 (-) False LOC113526510
TU124615 other downstream 2207734 26239330 ~ 26241005 (-) True G105376
XR_003402762.2 other downstream 2899811 25385325 ~ 25548928 (-) True si:cabz01090165.1
TU126682 other upstream 1249837 29702152 ~ 29713992 (-) False hipk3b
TU127077 other upstream 1891216 30343531 ~ 30344876 (-) True G107525
TU127397 other upstream 2277643 30729958 ~ 30732031 (-) False bbs10
TU127465 other upstream 2364264 30816579 ~ 30819614 (-) True G107803

Expression Profile