RNA id: XM_026926926.2


Basic Information

Item Value
RNA id XM_026926926.2
length 1658
RNA type mRNA
GC content 0.47
exon number 6
gene id wfdc1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10425740 ~ 10439871 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTTCCCTCATTCTTCCCTCTCTTTTCTCCACTCCTCTTACTTTCCTTCCCTTTTTTCTCCCCACCCCACACTGCTTCTCCTCTCACCTTCCCTCTAGTTTGTTCTCCCAGATGTAAAGCACTCTTCCGTACGAGCAAGCTCGTGTAAGTGCACAAGGACAGAGACCAGCACTGGTGTACAGGCTGTGGGGCAACCACAAGGAAATACACGCATTCACTCACACGCTCACTTACACACAAACTCCAAAAGGAAACCGCAGtgtaaacacacaaagacaataaaaaattGTCAAGAGTCTAGACAGCAGGACGAAACTTCAAAGCGTGGGAGTCGAGAGGAGAGCgagaagaggagagaggcaAGAAAAGAGAGGAGCGAGTGAAGGAGAAGAGCCATGGCAGCCACTCAGATCCCAAGCCGGCTAGCTCTGCTCGTCTGTCTGCTGCTGCTCGTCACCGGCACAGAGAGCAAACGCAGACTCAGGAGGAGAGGACTCAGCCAGAAGGATTACGAGTACCCAAACCACTCCCAGTCCAATCAACACCAGAAGAATGATCGGTGCCCACCTCCGCCTCAGATGCTTCCCGAGAGGGCGTGTGAGGTGCCCGTCTGCCGCTCAGACTCAGAATGTGAGAGACACAAACGCTGCTGTTACAATGGCTGTATCTACGCCTGTCTGGAGTCAGTTCAGCCTCCACCTGTGCTGGACTGGTTGGTGCAGCCAAAGCCACGGTGGCTTGGTGGAAACGGCTGGCTCTTAGATGGACCAGAGGAGGTTCTCCAGGCTGAGGCCTGCAGCACCACAGAGGACGGGGATGAGCCTTTACATTGTCCTACTGGATACGAATGCCACATCATTAACCCTGGAAACCCCTCTGCGGGCATCCCCAACCGAGGCCAGTGTATCAAACAACGGGGAAACTCAGGAAGCAACTCCAACATTGCAGTGGGTTATGAGAAACATCACAAGCACTTAGGCTGAAAAGCagGTGACCTTCATAGCCCTACAGAATctacacaacaaaacaaaaccagtcAACATTTCTGCGGAAACTAGATGTCCTTATTTCACAGGTCACAAAGCTGTTATTTGGTGCTTTATGTTCGAGGTGCTATAACACGGAAAAATCAACATTTCCTACCTCTTCCAAACAGCACACAGAATCTTATAACCTGCCAGCTCAACTTCACGACTTTCTCCTAGAAACTCACTGTTTAGTAAAAATAGTATTTGTTCTCatagtatttaaaatatttaaagtaagCTAAACCTGAGAATGTACCAAAGATACATGTACCCTTACACACTTTACCAGGCTACGGGACAACCAAAGAATACGTCTGCACACAGACATCTCAGGCATAATTTTAACATAACAAAGCCACGTTACATAGATTCCTCCATTGAAATACTGCAAATTAAGTCATTTGGCTCGGGAATGTTCGGGGATCCTCTAGGAGGAGCTGTAATCTGCAGCCAGGGACAGAGAACTTCAGACTCAACTTCTCATCCTGTTCTCACTTTGAACCTCAGCAGGAAAAGTggaaagaaaattaatgaaaaaaaaattacagtttccttaattacaacaaagaaaaatatgggCTATTAATCCtgtattcataatgcattatatagacacatttataatgtgtg

Function

GO:

id name namespace
GO:0010466 negative regulation of peptidase activity biological_process
GO:0005576 extracellular region cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115309 lncRNA downstream 54415 10370748 ~ 10371325 (-) True G97173
TU115308 lncRNA downstream 55323 10369263 ~ 10370417 (-) True G97172
TU115237 lncRNA downstream 153790 10266978 ~ 10271950 (-) True ttc38
TU115159 lncRNA downstream 330382 10071553 ~ 10095358 (-) True G97054
TU114927 lncRNA downstream 507307 9892526 ~ 9918433 (-) True tmtc2b
TU115347 lncRNA upstream 39196 10479067 ~ 10479287 (-) True G97204
TU115367 lncRNA upstream 79226 10519097 ~ 10519305 (-) True G97224
TU115368 lncRNA upstream 80924 10520795 ~ 10520997 (-) True G97225
TU115345 lncRNA upstream 87239 10527110 ~ 10529510 (-) False si:dkey-246g23.2
TU115392 lncRNA upstream 217321 10657192 ~ 10661052 (-) True G97246
XM_034305228.1 mRNA downstream 26865 10295851 ~ 10398875 (-) False mical3a
XM_034305227.1 mRNA downstream 26865 10295851 ~ 10398875 (-) True mical3a
XM_034305258.1 mRNA downstream 52265 10295851 ~ 10373475 (-) False mical3a
XM_034305226.1 mRNA downstream 52265 10295851 ~ 10373475 (-) False mical3a
XM_034305259.1 mRNA downstream 52267 10295851 ~ 10373473 (-) False mical3a
XM_034305362.1 mRNA upstream 9115 10448986 ~ 10453158 (-) True si:dkey-246g23.4
XM_026927066.2 mRNA upstream 37315 10477186 ~ 10505123 (-) True kcng4a
XM_026927354.2 mRNA upstream 88306 10528177 ~ 10581902 (-) True si:dkey-246g23.2
XM_026927352.2 mRNA upstream 90875 10530746 ~ 10581902 (-) False si:dkey-246g23.2
XM_026927353.2 mRNA upstream 90875 10530746 ~ 10581174 (-) False si:dkey-246g23.2
XR_004578315.1 other downstream 130917 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 130917 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 1947504 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2811644 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 3268252 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 1148130 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 1872211 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1957816 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1981231 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 2605952 13045823 ~ 13052311 (-) True G98770

Expression Profile