RNA id: XM_034305558.1


Basic Information

Item Value
RNA id XM_034305558.1
length 3461
RNA type mRNA
GC content 0.49
exon number 18
gene id rfx4
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11489642 ~ 11506690 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCATGAAACATCAGCAAACATTTTGACGGCTCTGGCTTTTCCCCCCTCTGGATTTCTGGAGTCTCTGACCCTCACACCCCCCCACCGCTTCAACCCTCACCCCCGCCACCTCTCCTCCactatcaccaccaccaccaccaccaccatcttctctctctcttactctctctctctctctgtgtagcCAGCACATCGTATGCGTCTCAGTGACAGGCAGTGCTCTCGGAGAGTCGCAGGGAGCTGAGGAGGGGGAATCCTGCTCGAAGCCATTTTCTCAGAGGAGCCCTGGGGACACTGGATGGGAAGAGGATGCACTGTGGGCTGCTCGAGGAGCCTGATATGGAATCCACAGAGAGCTGGATTGAAAGGTGCCTGAATGAAAGCGAGAGCAAACCCTATTCCAGCCACGCGTCCCTGGGGAACATGTCCACGGATGAAAATGAAGAGAAGGAAAATAACCGGGCATCTAAACGTCATTCGACACCTGCAACTTTACAGTGGTTGGAGGAGAACTATGAGATTGCTGAGGGGGTGTGTGTCCCTCGCAGTGCACTTTATATGCACTATCTAGACTTCTGTGAGAAGCATGGCACTCAGCCTGTCAATGCTGCCAGTTTTGGGAAGATTATAAGACAGCAGTTCCCTCAGTTAACGACACGAAGGCTGGGAACCAGGGGCCAATCAAAgTACCACTACTATGGCCTAGCAGTGAAGGAGAGCTCACAGTACTACGATGTGATGTACTCCAAGAAGGGTGGCGCCTGGGTAAACGAGACAGGCAAGAAAGAGGTTACCAAGCAGACAGTGGCGTATTCACCCCGCTCCAAACTGGGTACTCTGCTGCCAGAATTTCCAAATGTCAAAGACCTAAATCTGCCTGCCATTCTGCCAGAACAGAAGGTTTCGACGTTTATCATGATGTACAGAACTCACTGCCAGAGAATACTAGACACCGTTATACGAGCCAATTTCGATGAGgtccaGAGCTTCCTGTTGCATTTTTGGCAAGGCATGCCTCCACACATGCTGCCTGTCTTGGGCTCATCCACTGTAGTAAACATCGTAGGGGTGTGTGACTCCATCTTATACAAAGCCATTTCAGGAGTCCTCATGCCCACAGTCCTGCAGGCATTGCCTGATAGCCTGACTCAGGTCATCAGGAAATTTGCTAAGCAGCTTGATGAGTGGTTGAGGGTGGCTCTGCACGATCTGCCCGAGAACCTGCGCAACATCAAGTTTGAGCTGTCAAGAAGATTCTCCCAGATCCTCAAGCGACAAACGTCATTAAATCATCTTTGTCAGGCGTCACGGACCGTGATCCACAGTGCAGACATCACCTTTCAGATGCTGGAGGACTGGAGAAATGTAGATCTGAACAGCATCACTAAGCAGACACTTTACACGATGGAGGACTCGCGGGAGGACCAGAGACGACTCATAATCCAATTGTATCAGGAGTTTGACCGGCTGCTGGAGGATCAGTCCCCCATTGAAGCGTACATCGAGTGGCTGGACTCTATGGTGGATAGATGCGTTGTGCGGGTGGCAGGGAAGAGACCCGGATCCCTGAAGAAGGTTGCTCAGCAGTTTCTTCTCATGTGGTCCTGTTTTGGGACAAGAGTGATCCGGGACATGACACTGCACAGTGCCCCCAGCTTTGGCTCATTTCACCTGATTCACCTGATGTTTGATGACTATGTGCTGTACCTGCTGGAGTCACTGCACTGCCAGGAAAGAGCCAATGAGCTGATGAGGGCCATGAAGGGAGAGGGAACTACAGCAGACAGTAGTGAGGATGTGATGCTAACTGAGAGCACCTCCGTGTCCCCTGAGCCCTACTCTCCTGCAAAGTCGGTGCCCTCAGTGGGAGCAGTAGCCACCAGCACCCCAACTTCAGCCCAGTCCCCAGAATACAGCAGTGTGTCTGTTACCTCAGTGACCACGTCAGGAGGCAATCCGCCCGATGGAGGATCCCAGCTGTCCTGCATGCGTAGCAGCGCCCCAGTGCACCCTACCTCGTCTGCACACCGGATGCAAGTCTACCCCTACAGAGACGAGCATGGCTACACGGGCAGCTACAACTACAGCAGCTACACGAATCAGCATCATCATGCCATCCAGACCCAGTATCCGAGTCTGCCCCATGACGCAGGCCTCCCCACCCCGCTGCACTATTCCTCTTACCACCGTTCCTCTGCACAGTATTCATTGAACAGCCCGATGTCCCGCATGGAGCCATGTCTGATGGGTGGCACTCCTCGGCTGCATGCGACCCCAATGACACCTCGCTGGCCAGATGTTCCCTCAGCCAACAGCTATTCCAGCACTCCTATGCACTCAACACGCTATGCCTCTACAGGGGACATGTACTCCTCTTTGACACCACGCAggaactctgaatatgagcatGCACAACACTTTCCTGGCTTTGCCTATATTAGTGGAGAAGCTACTACAGGTTGGGCCAAATAGCCAAATCTTTGTCCATTCACAAGTATCACCAGAGACATGGGGAGTGTGTCAGCATGTGCGTAAAGAAAGGACGAACTCCAGCAAGGCCAAGGAACCCCCAGCGTCATCCTCCCAACATAAGTGTCAGTGGAGGATTGAGGGGGATTTCAGAAAGCACGTGTGTGTCAAAGGGTGTCTCCTGTGAGAGCTGCCAAACTGACTCTTTCTCACCAAGCAGAATCATTGTGACGTGATGACAGTGCAGGTCTAGCCTAAGTGTGCCTTTTAATTATCTTTAAACTCCTGATTTTCATTCCTTCTCCGAACAATCTTGGATTGTGGCCTAGTTTTATTATGAAAGTATGCATCTAACATGCCTCTGCCCTGCTGCTTGACGTCAAAGCAGCTCTTTAACAACACTAAAGATTTCATTATCTCACTGTGTATCTGCCTTTGTGCTGACTGCTTTCCTGCATTTCCTGACTCATGCTTTGCAGTAAACAAACCAGCCAGCATAAAACTCCATCAGAGGCCTCTTGGCCCAGTGCCATGATATGGACGTCAAAGCAAGGGAGTTTATTGCTGAATTGAATTACATCTATTATCTTATTACTGATTGTATATGTGAATATGGGGTGCTGACGATTTCacagtgaaatgttttgaatGCTGTACGTCAGCAGTTTTGCGCTGTTCTTTGTGTTACAGGCCCTGTTGCTGTCACTGTGGGAGAGCTTAACTCTAAACATTTTCCTTAGTAACACGGTGTCCTTTGGCTTTGGTTATATATGTTTGTATtgtaaattgcatttttttttatttttagaaaagtgTTAACTtagatttgtgtgtttttaaatgcactCAAAGGTACAGTGGACCTATTACCCTATGggtagaaataaaaaagaaaagaatatcaaaatgtaacatttatctTTAGCCACTTTCTCTTGTAAATAAAAGCACTCAATAACTTCTGTGGTGACAGCTGTTACCATGTAAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116033 lncRNA downstream 12528 11396116 ~ 11477114 (-) True G97831
TU115775 lncRNA downstream 298802 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 301619 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 315469 11172687 ~ 11174173 (-) False pdf
TU116158 lncRNA upstream 174042 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 184310 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 184310 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 245838 11752525 ~ 11753198 (-) False plekhg7
TU116261 lncRNA upstream 364292 11870979 ~ 11871109 (-) False sspn
XM_026927467.2 mRNA downstream 5184 11470088 ~ 11484458 (-) True ric8b
XM_026927786.2 mRNA downstream 35764 11449484 ~ 11453878 (-) True tmem263
XM_026927458.2 mRNA downstream 81322 11406563 ~ 11408320 (-) False mterf2
XM_034305059.1 mRNA downstream 81322 11406563 ~ 11408320 (-) True mterf2
XM_026927787.2 mRNA downstream 107051 11320829 ~ 11382591 (-) True btbd11b
XM_026927504.2 mRNA upstream 2088 11508775 ~ 11535664 (-) True polr3b
XM_026927037.2 mRNA upstream 30555 11537242 ~ 11542381 (-) True endouc
XM_034305373.1 mRNA upstream 36973 11543660 ~ 11576988 (-) True ppfibp1b
XM_026927540.2 mRNA upstream 71558 11578245 ~ 11581884 (-) True si:ch211-245j22.3
XM_026927539.2 mRNA upstream 79370 11586057 ~ 11610963 (-) True arntl2
XR_004578315.1 other downstream 1194819 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1194819 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 3011406 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3875546 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4332154 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 81314 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 805395 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 891000 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 914415 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1539136 13045823 ~ 13052311 (-) True G98770

Expression Profile