RNA id: XM_026927027.2


Basic Information

Item Value
RNA id XM_026927027.2
length 7383
RNA type mRNA
GC content 0.44
exon number 13
gene id mapk8ip2
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 7729088 ~ 7780398 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGATCTGCAGCGATTTTCTCTGAACGGCGTCACGCGCTCTCTGCCCACGCACAGCAACAGCATCATCACGGTGCAGATCTCACGCATCCGTGTTGTTCAACGAGATCAATCCATCTTCCCAAAGCGCGCTCCGGCTGTCCCCGTCAGCAGATTAGGCTGAGGTAGCAGGTGCATGGCCGGACTCGAAAACAACACAGTGGTTATTCTCTTATCaattctctctattttttttttttgtaaatattctcTCGGCTTTTGAATCAGATCTGATGCCTGAGAGCGGCGCGCGCGCCTGAATCAGAGAGGTCGGGCCCGGTAATCGCATCCGCAGTGTGGCCAGAGACAGGGAgacgcacgcgcgcgcgcgctcacacacacacacacacacacacacacacacacacggagagagagagagagacagacagacagacagagagcgacGCTTGGTGTGCATTTGCCTCCGTCCCCGCCGTCTGTGGATGGGCCGCGCGCCTCCGCAGTCGCCGCTCCGACGCGTTTAGTGGATGAAGATGGCGGACAGAGCCGAGATGTTCTCCCTCTCCACCTTccactccctctctcctccgGGCTGCAGGGCTGCACATGACATCAGTCTGGAGGAGTTTGATGATGAAGATCTGTCTGAGATCACAGATGACTGTGGCATTGGCCTCAACTATGACTCTGATCCTTATGAAAAGGACTCCCTCATCCTGGAGAAGAGTGATGTCCACCATACTGTGTGCTCATTCCAAGATGATTTCCAGGAGTTTGAGATGATTGACGATGAAGacgaggatgatgaggatgacgAGGATGGAGAAGCAGATCCTGATGCTCCACCCTCTCCCTCTGcgtctcctcctccttcccctACTTTAGCTTCCCTTAAGAGCCGCCCCACAACCTTAAACCTGACCACTGCAGTTTCACAGGATTCCTTGAACAACAACAGTAGCGTATCTCCACGAAAGTCAAGCTGGCAGGAATCTCTTCGCATCTCCACTTCACAGGGTCGTGTGTCTCCAAGCCACACTTGCCTCGAGGATGGTTCCCACGTTACTGGCACATGTACAGGGGCTCCTGGCACCACAGTCTCTGCCAAAGGTTCCTTTGGTCAGCACAACTCCTCAGGCGGTCCTGAGGTCACTGAGGTAAAGCCTTCTGCTGAAGGGACTCTTGAGGAACGTATCTCCTCAGGTGATGATTGCACTTCCCAGTGCTCTGATACTGAAGTTGACCATGACCTCAATGGCCATGCCAAACGCCGACAGTGCCGTCCTCGACCTGATGACACATACACCATCACTACGGAGACTGCTGATGACCCAGAGCTGGAGAACGACCTTACGATGGATGGCACCAGCAAGTGCCTATCCTCTACAGCACCGCTAGGGAATGATGCAGAGACCCCTCTGTCAGATGAGGAGTTAGATAAGGAATTTGAGATTGACTTCATGAACCAGGAGACCTTTGATCTAACTTGTAAGGAAGAAGAGGGCTCATCCTATGTAGAGTTTCCCAGCATTGAACCCACAGATCTGTCTTCTCTCTCCGCCCATGCGTTGTCCAGCCAGTCTGAACCCAGAGATGAGTCTTGTGAATCGTCTCAGAATCAACCTGCTGCATCAAATGACACAACATCTCCTTCCTCTGACCCTGGCATTGCTGACATGAATGCCAAGCGCTATGCAGAGTCAGACCACCACAGTGATGATCTTAGCTCCCCTGGATCTGACTCTGATCTTGAGGGTGAGTTGGAGGCAGAGTTTGCCTGTGGTGGTCCACTGGTTAGTAACATGATTTCATCCATCTCTGAGACAGAGCTGGACTTGACTAGTGAGTCCagcagtggaaggtcctcacaccTCACAAACTCAATTGAGGAGGCCAGCTCCCCAACATCTGACCCTGAGCTGGACCACGAGCTTGATGTTGAACAAGACAGTGGCATTGTGGGTCTGAAGACATCTCTGCTTTTAGGCCAACCCGAGCCAATTAAACAAGACCTTTCACCATATCTGGAGTACAGTCCAGACATCCATCCTTTGGATGATGATCAGGCCCTGATGGGGCTACAGAATGTGGATGATGAGCAAGGGTTTGAGCATCAAGCTGATCCAGATGAGACTCTGCCTCCTTCTGTGCCCTGTGATGACAGTGCAACTCAGCAACTGCTGCTGAAGATTGAACCAGATCATAGCCTGGAAAGCTTTAAACGGTCTTTCTACCTTCCTGTTGAACCTAGACTCATACCCTCAGTGGATGACTATGATGGAACCACTGAAGGAGACTCTGAGTCAGAATCAGAGGATGAACTTAGTGAGAACTCAGACTCACCATGGCTTCTTAGTAACCTGGTCAACAAGATGATTTCAGAAGGGTCCTTTCCAATCAGCTGTCCAGAGGATTGCCTCAGGCGCTCTGCCTCCATCTCTGATACCATCTCACCCTCGTCTGACCTGGAAACAGAAGCCTTCAATGAAAGCGAAGTCTACAGGACACGGATGCCAAAATGTGAAGGAGACTCCCAGGAACAGCCATCAGTGGGCACAGATATGAggacagatggagaaaaagatGACAGAAGGGACAGTTGTGGATCAGGAGAAGAGCACGAAAGCAAGGCTGCCATCTCTTGTCTGTACATGAGCAATCCTACAAATGACACTGTTGTTCCTGTGTGCTTGGAGAGATACCATTCCAACAACACAGACCAGAGGTTTACATCCCAGAGGTCACTGAAAAATCAACAGAATGAGCAAGAGGAGGAGCCAAATAATGACTTGATGATGGACAGGATGAAGGAACTGGACTCCCCCAGCCTAAGTGAGAGCATCATCAGTGATAAGGATGAAGGGAGAGAGACAAGAGTGGATCCACTTTCTCTGGAAAAAATGACAGAGGTCAAAAATAGTCTGACACTTGATATCCCTACAGCACAGACTAATCGCTGCTTCAGCCTCACATACTCCACAGATAATGATGAAGACGAGCAGGATGCGTCACCTTTCCTGGAGGCTATTCACAACCCACCCTCACCCTATGGAGATGATACTTACCTGGACAGTTCCCCACCTATTGATGAGAGTGTCCGGGAGTTGCGAAATACCTTTGATCCAGCGGGTGTCAGACCTACGGATGACTCCTTGGCGTATGACTCAGTAAAGTATACTCTAGTTGTGGATGAGAATACTACCCTGGAGCTGGTGAGTCTGAAGAGATGCACCTCTGTTCTCAGTGATGACAGCGACGGACTCTCCACTGTTTGTGATGAAGAGGTTgctgatgaggatgatgatatCTATGGGCAGAGCCAGACTGTGGAAGGAATGCACCCTGATCTATTGTTGAGCTCCTCCTCAGAAGAAGACTCCTCACCAGAAGCAGACCTACCTTTCTCCAAAAAATTCCTCAATGTGTTTGTCAATGGCACATCACGATCCTCCAGCACAGAATCGTTCGGGTTGTTCTCTTGCACTATAaatggagaggagagagaccaGACTCACAGAGCAGTGTTCAGGTTTATCCCACGTCATGCAGATGAACTAGAACTGGATGTTGATGACCCACTTTTtgtggaggaagaggaagatgatTACTGGTACCGTGGCTACAACATGCGCACGGGTGCTCGGGGAATCTTTCCTGCCTATTATGCTCACGAGGTCATCGGCCAAACCAAAGACCTGATGGCAATGAAGAGAAACCCAGCGTGGATGGAGAGCTTCACTGTGCAGTTTTTGGGTTCGGTTGAAGTGCCTTACCACCAAGGCAACGGCATCCTCTGTGCTGCCATGCAGAagATTGCCATGGCGAGAAAGAGGACAGTGCATCTCCGTCCTCCATCTTTGTGTGAGCTGGAGATTAGCCTACAGGGAGTGAAGTTGATCATGAGTCTGGAGGATGAGTATGACCTCTccgaggagTTTGACAGATGTAGTCACTTCTTCCAGATGAAGAACATCTCTTTCTGTGGATGCCACCCAAAAAACAACTGTTACTTTGGCTTCATTACCAAGCACCCAGTCTTGAACAGGTTTGCGTGCCATGTCTTTGTCTCTCAGGAGTCCATGCGGCCTGTGGCTGAGTGTGTGGGACGTGCATTTCAGGAGTATTATCAGGAACATCTTGAGTATGCCTGTCCCACCGAGGATATCTACCTTGAGTAGAGGTGACAAAAGGTTACCACAGTAACCTCTGCCCAACAACAGAAGTGTGTTCCTGGTTTTGGCCGCTTGGGGGCTCCTGGTGGCCTTTAAAGGGTTTAATGTAGGCATcgagtttctctctctgtgttttcacATGAACTGAGCTGAACGTGTAGGTTCAATCTTAGTGATGCATCAATTTGTTTcactatttgtttgtttcctcttttatttattctcatCCTTGAAACAGATTGCCTGTTTAACTTTTGTATGACTTAGTACCTAGGATTGTGGCTCAGTTGAGATACTTTTACTTTTTCCTGGTTTAGAAATGCCAAAACTATgacatcacacattttaatgcatGGCTTTGAGGGTTATGCTCACAGGCAGATATACACACAGGAAATACTTATATTTGAAATTCATTTTGAAGGATGGGTTTCGTTTGTAAATATAGTACTCGTTTGATTATTCCAAAATATGCTGAACGAGGTTTGTACTGAAATGAACATCTGGACAGGTGTTGGATTAGTAATATAATGACTATCTGCTCACTGTAGTAGAAGGTTCCTTGTGCGTTCTTATTATACCAtcatgtaaatactgtatatttagaaAACAGTTGGTGACTACTACAGACGTTCGTTACATCACTGTATGTAAGTAGCACCTCCATCAGCAAATGGAAGAATGAAGAGGATTGCAGGTGGCCAGGAAGGCATGTTTGTTAGCCTGAGAATGGAGAGCCGGGTAGCATTGGCCATGCACGGTCCTGTAAATTACTATCCTCTTACTAAATTACTCAAGCTCTGCTATAGCTTCCTATTCCCAATGACTCTTTCTTGTGACTCTTTGTTGGCCATCTTGTGTAATTCTCAGACTGTGCTTTAGTGCTTTATGATGCTGAGTCTATTTAGTCACTCTCTTCATTCATTGAAGGCTAACAGGTAAATGTACAGCCAGCCACTGGCAGACTGCAGTCATCAGCCCGATTACTTAGCAAATGGTGAAATTTACCAGATTTACTTAGGAAAAGGCCTAATTAAATTCTACAGCCATTCTAGATAAGGCTATTGAAGATAATgttaaacaacaaataaattgttACATGAAAATCATTTCCCtaaaatgcagtgtttttttttactattagcATTAGTGTCTGATAGTATCactgtataatttttaaaataatcttttcaTAACCTTATACATTTTTTCATGCTTGGCCATATACAACAAGTGACAAGTCATGAAGTGAAATGATTGTACGGTGTCAGTCAATTGTTTTTGAGCActccacattttattatttttgaataaacaaGCAATTGGCTgatttttgaaaaacatttttttaaaaattggacAATCTAAGTAAAGAACAGTTAAAAGTGAATTGAAAAAaggattttaattttgtatttcattggAAAGAATGGAGATATAATTGGAAAAGGCAGAGATTTGGCACTTGTCCCAGCCAGCATATATTTGTATGCAGTTACAGCTGATAAACTTGAGCACTTCCTGAGTCTATTAATTATATACTTAATTTGTTCACCCtgactttaataaagcactcatttagagtccTATTAGGATCTGAGGGTGAACAGTTAATAAGTGCTTACATACATTTAGCTCTAGTGTTCAAAATCATTTGACTGCCAGTGTATATGCcattaaaagtaaaacataaCCACACAGATCTTACAGTACTGATTGGAAATGTAGTTTGATCTTTCTACTTTGCCCTCCTGTCAGTCAGTAATTAATAGACACAGTAAACATGATGGTTTTATTGTCTCCATTGTATTTATCTCTAGCCCTTTGCCTAACCTTCACTGCTTCATGGCTAGACTGTACACAGTAGAGAGCCCCCTCCTGGCCTTGTATGATTTGTCCTGTATGATTGGAATTAACATCtgaattaattttataaaacagtaaaagcTGTGAAATAGTAATAGGAGGGTTAAGGGTTAGATATTGTACACCTGATATTGTACATTAGATATTGGGTTAGATATTGTACATTCTCACCTCTAATTCTGCCACAATGAAATTCTCCCAGCATTGTATGGACAGCTTGAAACTAAATAATGTATAGACTACATGGTGATTAAAAGTACTAATAGGCCTACAATTAGATTAAAAATTTGCTTCTCGGTGTGCTGATGCTTAGGAATTTCATATTCTTGTAACAAAGGACTTGATTCTTGGCTCCTGCAGACTGGGTTCATCATCCCGGTGTCAGTAGATCATAGCAGTGTAACTTTTAGACTGGTCCTAATTGCAGCTGTAGATGAACTCACTGCtcactgcatcacacacacacacacacacacgaccgtATACCAGTGGCCTGCAATCTGATTCCATCATTACTTGTCCATTTGTGCTGATGCCACATGTAGGAAAGAGCTGCGGTCTTAAGACTATAAATGTGATTTGGTGTCAGTTAGATTGCTGTAAATATTCTAGTTGAGATGACCATCCTGTGTCCTTTCTATTGAGtgttactgaaataaatatgtaaattttaaataaataataacgcTGACAATGATAACCTATCACAACTAAAACGGggttaaaaactgtaaattGATTTCCGTTAGCATTTGATATTTTGTTTCAGCTGCTTCACACTGCTGTATAGCTGTGGTTGAATGTTGTCACATTGTGCTGAATATCAGATGCCTGTCCATCAGCTGTGTATGTctttcacacaaacacccaAGTTTTTATGCTAACGTTAGCATTATCAGTCCAATCGTTTGGACTCTCCCGGAGGTTAGCAGAGATGGATCAGGACACTCATCAGGACTCTGAATCCAAacttctgactgtttttcatgAAGACGTTACTTCATTAATGTTTGTCCAGAAAGTAAATGGATTTCTCAGAATGTTTTGTctacattttagcattttacaaTCATTGATTGGTCATTAAACCCCTTTATGTATTGAAGCAGAGCAACTTCTGGAGTATGTAAGCTTGGACAGCTGAATGACTACAATAACTGCAAATCTTTGGACTGTAATTACATAACGCAGGCCTTTACTGTATATCAAGATGAACAGCAACAGTATGACATACTAGCTATCTTGtatctttaaaattaaacttGTAAAaaccaaaatggaaaaaaattccCTGCCTTGTCATGGATTTGGtcttaagaataaaacactatatgCTTGATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113383 lncRNA downstream 249981 7478872 ~ 7479107 (-) True G95482
TU113322 lncRNA downstream 298325 7387732 ~ 7430763 (-) True G95449
TU113344 lncRNA downstream 307237 7420628 ~ 7421851 (-) True G95460
TU113311 lncRNA downstream 392522 7336365 ~ 7336566 (-) True G95440
TU113068 lncRNA downstream 401385 7327488 ~ 7327703 (-) True G95227
TU113700 lncRNA upstream 39992 7820390 ~ 7859029 (-) True G95773
TU113718 lncRNA upstream 81124 7861522 ~ 7861806 (-) True G95783
TU113720 lncRNA upstream 92335 7872733 ~ 7873314 (-) True G95785
TU113752 lncRNA upstream 169364 7949762 ~ 7949962 (-) True G95815
TU113772 lncRNA upstream 204316 7984714 ~ 7984930 (-) True G95835
XM_034305464.1 mRNA downstream 34661 7438091 ~ 7694427 (-) False shank3a
XM_034305465.1 mRNA downstream 35076 7438091 ~ 7694012 (-) False shank3a
XM_026927732.2 mRNA downstream 114991 7442310 ~ 7614097 (-) False shank3a
XM_034305466.1 mRNA downstream 114991 7442380 ~ 7614097 (-) False shank3a
XM_034305463.1 mRNA downstream 114992 7438091 ~ 7614096 (-) False shank3a
XM_026927298.2 mRNA upstream 29814 7810212 ~ 7815160 (-) True sephs1
XM_026927297.2 mRNA upstream 30642 7811040 ~ 7817597 (-) False sephs1
XM_034305145.1 mRNA upstream 30642 7811040 ~ 7817589 (-) False sephs1
XM_026927064.2 mRNA upstream 38110 7818508 ~ 7829006 (-) True bend7
XM_026927257.2 mRNA upstream 67437 7847835 ~ 7976917 (-) False frmd4a
XR_003403522.2 other downstream 114992 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 571600 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 863749 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 1534941 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 3236349 4492546 ~ 4492739 (-) True LOC117597618
TU114125 other upstream 687903 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 2488079 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 2488079 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 3807603 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 4531684 12312082 ~ 12314525 (-) False admb

Expression Profile