Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026927037.2 |
| length | 1383 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 8 |
| gene id | endouc |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 11537242 ~ 11542381 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0090305 | nucleic acid phosphodiester bond hydrolysis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0004521 | endoribonuclease activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU116033 | lncRNA | downstream | 60128 | 11396116 ~ 11477114 (-) | True | G97831 |
| TU115775 | lncRNA | downstream | 346402 | 11190641 ~ 11190840 (-) | True | G97607 |
| TU115769 | lncRNA | downstream | 349219 | 11187495 ~ 11188023 (-) | True | G97601 |
| TU115763 | lncRNA | downstream | 363069 | 11172687 ~ 11174173 (-) | False | |
| TU116158 | lncRNA | upstream | 138348 | 11680729 ~ 11696665 (-) | True | G97932 |
| TU116155 | lncRNA | upstream | 148616 | 11690997 ~ 11693079 (-) | False | G97931 |
| TU116156 | lncRNA | upstream | 148616 | 11690997 ~ 11693079 (-) | True | G97931 |
| TU116205 | lncRNA | upstream | 210144 | 11752525 ~ 11753198 (-) | False | plekhg7 |
| TU116261 | lncRNA | upstream | 328598 | 11870979 ~ 11871109 (-) | False | sspn |
| XM_026927504.2 | mRNA | downstream | 1578 | 11508775 ~ 11535664 (-) | True | polr3b |
| XM_034305557.1 | mRNA | downstream | 30552 | 11489642 ~ 11506690 (-) | False | rfx4 |
| XM_026926955.2 | mRNA | downstream | 30554 | 11489642 ~ 11506688 (-) | True | rfx4 |
| XM_034305558.1 | mRNA | downstream | 30555 | 11489642 ~ 11506687 (-) | False | rfx4 |
| XM_026927467.2 | mRNA | downstream | 52784 | 11470088 ~ 11484458 (-) | True | ric8b |
| XM_034305373.1 | mRNA | upstream | 1279 | 11543660 ~ 11576988 (-) | True | ppfibp1b |
| XM_026927540.2 | mRNA | upstream | 35864 | 11578245 ~ 11581884 (-) | True | si:ch211-245j22.3 |
| XM_026927539.2 | mRNA | upstream | 43676 | 11586057 ~ 11610963 (-) | True | arntl2 |
| XM_026927475.2 | mRNA | upstream | 130000 | 11672381 ~ 11675853 (-) | True | si:ch211-219a15.3 |
| XM_034305446.1 | mRNA | upstream | 210721 | 11753102 ~ 11769985 (-) | False | plekhg7 |
| XR_004578315.1 | other | downstream | 1242419 | 10268477 ~ 10294823 (-) | False | ttc38 |
| XR_003403495.2 | other | downstream | 1242419 | 10268477 ~ 10294823 (-) | False | ttc38 |
| TU114125 | other | downstream | 3059006 | 8468301 ~ 8478236 (-) | False | LOC113534821 |
| XR_003403522.2 | other | downstream | 3923146 | 7442373 ~ 7614096 (-) | False | shank3a |
| XR_003403498.2 | other | downstream | 4379754 | 7147944 ~ 7157488 (-) | False | LOC113534453 |
| XR_004578339.1 | other | upstream | 45620 | 11588001 ~ 11610964 (-) | False | arntl2 |
| TU116624 | other | upstream | 769701 | 12312082 ~ 12314525 (-) | False | admb |
| XR_003403510.2 | other | upstream | 855306 | 12397687 ~ 12405281 (-) | False | znf143b |
| TU116638 | other | upstream | 878721 | 12421102 ~ 12423978 (-) | True | akip1 |
| TU117111 | other | upstream | 1503442 | 13045823 ~ 13052311 (-) | True | G98770 |
