RNA id: XM_026927055.2


Basic Information

Item Value
RNA id XM_026927055.2
length 2613
RNA type mRNA
GC content 0.44
exon number 12
gene id mlc1
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 11308950 ~ 11318192 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGAGGACAAGAGAGAGGGGGGGTAGGAGCGGGGAGAGAAGGACTTTTGTTAAGACTACTACAGTACCAGACCAACGAGCTTGAATGCCATGGGTGCGCCTGAACGACAGTTGGTGGGCTGATATAAACTGGAACACTACGAAGCTGAACAGATCCTCTCCCAAGGTTTGAATTTGAAGGCCACAGTAGTGAAGCATGATGCAGAGGGAGGATGAGTCTGCACGGGAGGAGTTTAGCTACACTCATATCCCCACCCTGGAGCGAGCAAGTGTAGGTGGCACACTGAGTCGACGgctggacagagagagggacagagtgGAAAGGGACAGCTACATAGTGGACGTGAGAGCCAGTGATTTGGAGCTGGACCATGCTGAGCCGTTACACCCCTGTTTCAGCTACAGAGCCTGGCTCTACAGCATCCTCATAGGGTGTAGTCTCCTGATCACAGCGGGTTTCTCTCTCTACCTGGGTAATGTGTTTCCTGATGCGATGGACTACTTGCGCTGTGCAGCtggagctAGTATCCCAGCTGCAGTGGTGAGCTTTGCCATCGCCACAAACTGGCGAGTTGCAGTGTCTGATTTTCAACTGGTGTATGTGTCCACATTTGCTGTGACAACCACATGCCTGGTATGGTTCGGCTGCAAGCTGGTTCTTAGCCCATCAGCCATCAATATCAACTTTAACCTGATCCTGCTTACTCTACTGGAAGCCCTCATGGCCAGCACTGTCATCCTGTCAGCTCGCTCTGTAGAGGACTGCTGCAGCCAcagcaagcAAGTATATGATGGTCCTGTGGCTGTGACTCCGTCTAAATTCCCTTCACGTCTTCTCAAGGCTTATGCTGTGATTGAGGTGATAGTTGGGATCTCTGCAGTATTCGGTGGTATTATTGCTCTCAACATGGATGCTCTGCTCCCAGGGCCCTACGTCTCTGTCACATTCTTCTGGATTCTAGTGGCCTGTTTTCCGAGTGCCATAGCCAGTCATGTGGTGTCAGAATACCCCAGCAAGTGCCTGgTGGAGACATTGATTGCCATCAGCAGTGTCACGTCACCACTGCTGTTCTCTGCCTCTGGCTTTTTGTCTAACAGTGTATTGAGTTTTATTGAGATCTTCCAGCATGAGGTTCCCACAGCCAAAcaatCATACGACATCCTCCTGTTGATTCTGATGTTGCTGCTGCTGGTTCAGGCAGGCCTGACACTGGCCACTGTGGTACACTGCGCCTCTTATAAGGGTCAGCTGCGTATAGGAGCACCAGAATGGGATGACAGTCCACATCTGGAGCCACACCAGTGCGAGCAACAGGGATCCAATGGCACACTGCGAGATTTTGACAAAGAGAAGGCCTGGAAGGCAGTGGTAGTGCAAATGGCCCAGTGAGCACGTGCACAGGGAGTAAAGAGAACAAACGGgaatgagaaaaaatgtgagTGGAGGAGGACACAAGAAGGTGAGAGTAAAGATAGGAAAAGTGAAAATAGAGAGTACACAAATATGGAAAATTAGAGGAGGACATAACAAACGCGATCAGAAGGAGGAGTAGGTCAGTGACGGTTCATGAATTTGTCAGTGTGTCCTTGTCAGAAGAGTTAATGCCATATATCCCAGAGATTCTCAgtgttaaaaatacaaatgtatagAGCATTTGAATACTGGCCATGACCATATATCTATTCTTAACAgtcacagaaaatgaatcatcatCCTGACTGTTCAGAATTCTCAGAAAAGGAAAATCAGCAGAGATTGTTGGGGCTTTAACGCCTTCtgcaaagaaataaaactcaCGACTCATGCGTTGTCCATATGTACAGTAAAGCTGGATTCATATTAAAATGTGAGTAAATTTATTCCTGTCAAGGAATCCACTTAGACTGTAGATTCCAGCCATCACTATACTGCATGCATACTTTCAGGAAGCTAATGACTATATTTATGTAACCTGTCTATGAATCTGAGCCACATCTATGCAAGTCAAGCATTTTCTACTAGGGTTTTCCACTATACAATACACTTAATGCAccaagtttatttttttagtaaaataaaaatagtatgtCTATGCTTGTGTCAAATTTGCTAATTGAACAGtttacagttaaacattttatttgcttaACATACACTGACATTATTCATGACAGCGTATTTAATGATTTCCTGTATTTTATGTGACCTGTAGGCAGTGACAGAGTAATGGTGTCCTCTCTATGACATACAATCTACATCAacagacaagaaaaaaatattgggCAATTCCACCCACCTAATTGGGTTATTTCTAATCACATTAGGCAGGGAAAATGGCTTTGGGCCACTTCGATATAATTTAGTTACAGTTTGGACTAATTTATAAAGAATGGCCTGGGTCTAACACATGGTTGGGCTGGAAAAAGTGACAATCCAAGTGTCTGGTAGTGTCTATGTTTTATAGAATTAAGTCAGTCGCACTAATACTAAtgactaatattttaatatgtcAAGTTCTGTATAATTTTCTAAATCAGAgagaaatgtaataatatgtaataaagtaATTGATTACTTTATGCGATTTAACCCATGTAAATGGAAACTCTGTTTAATTAAAGGTGACAGTCTGCA

Function

GO: NA

KEGG:

id description
K20070 MLC1; membrane protein MLC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115775 lncRNA downstream 118110 11190641 ~ 11190840 (-) True G97607
TU115769 lncRNA downstream 120927 11187495 ~ 11188023 (-) True G97601
TU115763 lncRNA downstream 134777 11172687 ~ 11174173 (-) False pdf
TU115764 lncRNA downstream 134777 11173321 ~ 11174173 (-) False pdf
TU115392 lncRNA downstream 647898 10657192 ~ 10661052 (-) True G97246
TU116033 lncRNA upstream 77924 11396116 ~ 11477114 (-) True G97831
TU116158 lncRNA upstream 362537 11680729 ~ 11696665 (-) True G97932
TU116155 lncRNA upstream 372805 11690997 ~ 11693079 (-) False G97931
TU116156 lncRNA upstream 372805 11690997 ~ 11693079 (-) True G97931
TU116205 lncRNA upstream 434333 11752525 ~ 11753198 (-) False plekhg7
XM_026927075.2 mRNA downstream 1909 11293326 ~ 11307041 (-) False panx2
XM_026927074.2 mRNA downstream 1909 11293326 ~ 11307041 (-) True panx2
XM_034305167.1 mRNA downstream 18898 11280607 ~ 11290052 (-) True trabd
XM_026927599.2 mRNA downstream 28981 11271252 ~ 11279969 (-) True selenoo1
XM_026927496.2 mRNA downstream 39457 11260726 ~ 11269493 (-) True mapk12a
XM_026927787.2 mRNA upstream 2637 11320829 ~ 11382591 (-) True btbd11b
XM_026927458.2 mRNA upstream 88371 11406563 ~ 11408320 (-) False mterf2
XM_034305059.1 mRNA upstream 88371 11406563 ~ 11408320 (-) True mterf2
XM_026927786.2 mRNA upstream 131292 11449484 ~ 11453878 (-) True tmem263
XM_026927467.2 mRNA upstream 151896 11470088 ~ 11484458 (-) True ric8b
XR_004578315.1 other downstream 1014127 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other downstream 1014127 10268477 ~ 10294823 (-) False ttc38
TU114125 other downstream 2830714 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 3694854 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 4151462 7147944 ~ 7157488 (-) False LOC113534453
XR_004578339.1 other upstream 269809 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 993890 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 1079495 12397687 ~ 12405281 (-) False znf143b
TU116638 other upstream 1102910 12421102 ~ 12423978 (-) True akip1
TU117111 other upstream 1727631 13045823 ~ 13052311 (-) True G98770

Expression Profile