RNA id: XM_026927060.2


Basic Information

Item Value
RNA id XM_026927060.2
length 5228
RNA type mRNA
GC content 0.44
exon number 17
gene id sema3ab
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8777992 ~ 8841060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTCACTCTCTCTTCGGCTACGTGCACTGTGGACTTGTGTGTGCTGAGCTTTAGAgggtagagtgtgtgtgcctgtgagGGAGCTAGTGGAAGTGCTTAGAGCTTCAGCAAGCTTAAGTTCACTTTTGTCTCAGTGTGCTTTCAGCTGAGGTGCTACTTTTACACGGATCAGGacaaagagggagaaaagaaaacaaggcaAGGGGACCAAGTAGATAAACAGCCTGAGGGCTTAGAAAAGacaacacactcatacacacacacacacacacacacacacatctacactcAAGTGTGTTGAGAACTGGTGCCGGCGGTCAGTTTTCTCTTGCCTGGGCTGACCAATTCTCCAAGAGGGATGTGATCATTGTACGCTTTACACCCTGACTCTACACACATCCATACACCTGCTCCATCCTCAGGTGCTGCTCTGAAGATCTGGACCTCTGTTAGTAGCTGTGTATCTTTGGGTTCATCATGGACTACTTTTGGGGGATGGCAGTGCTGCTGTGTGGGCTCTGGACACCGCAGAGAGGAGCCGATGCTCAGCGTGCCAAAAGCAACGTGCCCCGACTCAAACTCTCCTACAAAGAAATGTTGGAGTCGAACAACTTGTTTACTTTCAACGGACTGGCCAACAGCTCAGCCTACCACACATTTTTACTGGATGAGGAGAAGGGTCGGCTCTTTGTAGGAGCAAAGGACCATCTCCTGTCATTCAACCTGATAGACATCAACATGGACCAGCAGCTGATATCCTGGCCTCCATCTTCATCACATCGGGATGAGTGCAGGTGGGCTGGAAAAGATGTGCAGAAAGAGTGTTCAAATTTTATAAAGGTGTTGCAGCCATTtaatcacactcacctgtacGCATGTGGAACAGGAGCCTTCCACCCTGCCTGTGCTTATGTGGAGGTGGGCAAACGGCCAGAGGACAACGTCTTCAGGCTGGATTCATCACACTTTGAGAATGGCCGAGGGAAAAGCCCCTATGACCCAAAACTCATGACTGCTTCACTACTTattgATGGTGAGCTGTATTCTGGGACAGCAGCCGACTTCATGGGGCGAGACTTTGCTGTTTTCCGAACGTTAGGAAAGCATCATCCAATCAGGACGGAGCAGCATGATTCCCGGTGGCTCAATGAACCTAGGTTCGTAGGTGTCCATCTCATTCCTGAGAGCGATAACCCTGAAGACGACAAGATTTACATGTTCTTCAGAGAGAACGCCATTGACGGAGAACAAACTGGCAAAGCCACACATGCCAGAATCGGGCAGCTGTGTAAAAACGACTTTGGAGGTCACAGGAGTTTGGTGAATAAATGGACCACGTTCCTGAAAGCTCGGCTCATCTGCTCTGTTCCAGGCCTTAATGGAATTGACACACACTTTGATGAGCTGCAGGACGTCTTTCTGATGAGCTCAAAGGACTCTAAGAATCCTATCATTTATGCAGTGTTCACAACATCCAGTAATATCTTTAAAGGCTCagcagtgtgtatgtacagCATGGCTGATGTCAGGAGGGTGTTTTTGGGTCCCTATGCTCACCGGGATGGGCCCAACTACCAGTGGGTGCCCTTTCTAGGCAGAGTGCCCTATCCACGCCCTGGCACGTGTCCAAGCAAAACCTTTGGAGGGTTTGAATCCACAAAAGATCTACCTGATGATGTTATCACTTTTGCCCGAAGTCATCCAGCCATGCACAACCCAGTGCTTCCCCTCAACAACCGCCCAATCATTGTTAAGACTGATGTGGATTACCAGTTCACACAGATCGTTGTGGACCGAGTGGAGGCAGAAGACGGACAGTACGATGTCATGTTCATTGGCACAGATCTTGGCACAGTTCTTAAGGTGGTCTCGATTCCCAGAGGCACTTGGCATGACCTTGAGGAAGTTTTACTGGAAGAGATGACTGTGTTTAGGgaACCAACAGCTATAACTGCTATGGAGCTTTCCACCAAACAACAACAGCTCTATCTAGGCTCGAATATCGGCATTTCCCAGATGCCACTGCACCGCTGTGACGTTTACGGCAAGGCCTGCGCTGAATGCTGTCTAGCACGAGACCCCTACTGCGCCTGGGATGGCTCGCAGTGTTCCCGATACTTCCCCACCGCTAAGAGgaggacTCGGCGCCAAGATATCAGGAACGGAGACCCTCTCACTCAGTGTTCGGACCTGCAGCACAATGACGAGGAGAATGGTGAGAGCACCCTGCTGGATAAAACAGTGTATGGGGTGGAGAACAGCAGCTCCTTCCTGGAGTGCAGCCCTAAGTCTCAGCGTGCTCTCATCTACTGGCAGTTCCAGAGACATGGGGAGGACCGCAAACAAGAGataaaGTCTGACGAGCGAGTGATGGGAACTGAACAGGGTCTACTGATCCGAAGTCTGCTTCCGAAGGACTCGGGTGTGTATTACTGCCATGCAGTGGAACATGGTTTCATCCAGACACTCCTGCGCCTGACGCTCCACGTCATCCCCACTGATCATCTGGACGATCTCATACAACGGCCACCCTCAGACGCCAGCCACTCTTCACATGCCAAACTGTGGTACCAGGACTTCCTGTCTCTGATTGACCCGCCTGGCCCCAACAGTGTGGACCAGCTATGTGAGCAAGTgtggaagaaagagaggaagcaGCGGAGGCAAAAGGCCCACCACCTACATGCTAGTCAATCACATGCTGCCCAGCTTCTTCACACCAGCCAGTCCAACTCCAGCAAGTGGAGGCTTATGCAGGACAGCAAGAAAGGGCGCAATCGTAGGACCCACGAGACACCGCGGGCACCTCGCAGTGTGTGACCACATGCCCACAtaactgcaaacacacacaaatgtcgAATAAAGAGAAGTGACTCTGACCATTCTACTGACTGTGACTCTGAGAGgcacacacaggaaatgtgaATACAATATTCCACTCCTCCTGCAGAGAGAGTGTATGTTggaagcaaaacacacacactctgagctgTTCATTCAGACTCAAAATCCAGGAGTCTCCAGTGGAAAAATTCACTCATACCCAGAATGGATAATAACACGCAGCGACAATATTCTGTAAATATCATACAGAATTAAGTGAACTTCTACGAGACGTACTTCTGTCTGTCAGAATAAAGGCACAACTGAAGGCCACTGATTAAACTTCTGTGCGTATATACTGCATAAAACCCCAAAACGTGTATCTGCCGAGCAAAACTGAGTCAAACCCTTTCCCAGTGAAGATCCAGCGTGTCTCAGTGTACTCTTTTTCCAGCTCACTATTTTCCTTCTCCTTATTTTTAACTGCTCCAAAAGCATTTGGCCATGACATTAATACACAGCGTGTTTTCCCTTTCCTCAATAAGCTTTCCGACATAAGTACATCCTTCAGCTATTTTGTagagtaatatttaattttgtacttttttcagaattatatataagaatattacataatatagagttattttattaatgggGTCTCTTCATGCTCTCACTCGAGCCTCTGTTTTCTGGGCTACTAAGCATTTGTACTCAAGTTTTCTttatcagagctgcttttcGATTTTCCATATACCCTTATTATAGAAATCTTCACCCAAAAGAAAGTGACATGCCATGCCAAGTGTGATCAAATAATCCTGTTTGTTCCACTTCACTcttgaatgcttgaatctgatcaGTTAGAGggcgttgattcattttctataacaacagcaaGACAAAtcatatattaatgtgctcactcaaatacattatcatttctatagtaacaactcctTCACAGGAATTAaggttaataaatgttttaaaaaagtgctgttatttaacaaagcatCAAAACAAAAGCATCTAATTATTGATGTGTAAAGTTTTCCATAAGGAGAAGTTGAtatatttggaaggagtctccagtgtcagcgctttgtaatgttcagtaagttttctgccattaCGCCATTAAGTGAGGGACTGTTTACAGATGTTACAACGGaacatgttccacaacattaaatataactataaatggctaagAAATATGATGttacattcattaataaattaacatttattataattgacgaattgctgtggtataagaggaacaaaacactccAGGAatatgctgttctaggaaattcatcaacttcagggtggacATTAACTCTGTTTCACATTGTGCCACAACACATCACCTTgttattgattcatttcctataacagcacactgtgtggtgttttattccttaattaaataaagcatttgTAATTTATCCTGTGTCAGGTGTCACACAGGATTTGGgtggtgatttatttttttaatgggaaAGAATCTTGCATAAGAGAAAGTTCTTTTCAGAAGGTAAAACATTACCAAATCAGACCTCATTAAACCACCATTcatgtgtattttatgtttcCTCTTGCTGTAAATTTGAACTGACACCCAACCTGTATTCAGCCTGCACTGTATTATTGTGAAGAACTGAACACGTAGTTGAAAGCATAGTGGAGTTTTTCActgggaaaacaaaacaaaatctttcTTCTTCTATTCCTGAATTTTCTCTGtagtacagaaataaagaaataaaacttaGAGAAGACAGACAAGGCAGGAAGCCTTAATATTCCCTCTTCAAGGTCTATATTGGTTTAATTATAAAGAAAAGTATGTAAAAACACCAGAATGTAGCtgtgaatatactgtaaaatatttggGAAGAAAGATAAAACGTGTACAACCTGCATGCGAATGCTCTTATCACTCCATTTGTTCCTCTAGCATTTGCAGTAGCTAGTTAGTAATGTTGTGAGTGCCACATACAGCTGTAGACTCCTGACAGTCCACATTTACTCTGAGGTGGACATACTCCTATTCTTAGATATGTGACAAATACAGTGTTAGCTAAGGGCTGTACTGCTGCCTATGGTACTCTCTCCCACTGTAGCTCACACAGATGATGTATACACTACACGGACCTGGAATCACACAGGTCGgactgtgtgtttttcactaTTTTACAATATACAATGAGAAATGCAACTCAAAACAGTATATGGTCAATGAACCTTGGACAGAAACGGACACTTCCACAACAGTTGGGCAAAACTGGATGGAAAAGAGGGagagtgatgaaaaaaaaaatgctgctgtaaattatttgttttggCATGTATTCCAATGTTCTAATAAATGTCTCTTGTAAGAACTTGCTCTGAA

Function

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114213 lncRNA downstream 15396 8754558 ~ 8762596 (-) True G96220
TU114155 lncRNA downstream 147869 8629900 ~ 8630123 (-) True G96170
TU114151 lncRNA downstream 164978 8612815 ~ 8613014 (-) True G96166
TU114124 lncRNA downstream 323272 8395812 ~ 8454720 (-) False LOC113534821
XR_004578351.1 lncRNA downstream 433334 8326831 ~ 8344658 (-) True LOC113534629
TU114448 lncRNA upstream 273274 9084327 ~ 9086671 (-) True G96421
TU114462 lncRNA upstream 363611 9174664 ~ 9215815 (-) False cotl1
TU114463 lncRNA upstream 363611 9174664 ~ 9215815 (-) False cotl1
TU114521 lncRNA upstream 515628 9326681 ~ 9338784 (-) True G96484
TU114736 lncRNA upstream 605969 9417022 ~ 9417414 (-) True G96679
XM_026927063.2 mRNA downstream 35429 8702731 ~ 8742563 (-) True sema3e
XM_026927096.2 mRNA downstream 90351 8608017 ~ 8687641 (-) True pclob
XM_026926943.2 mRNA downstream 183719 8495560 ~ 8594273 (-) False LOC113534270
XM_026926940.2 mRNA downstream 183720 8492989 ~ 8594272 (-) False LOC113534270
XM_026927334.2 mRNA upstream 75175 8886228 ~ 8925270 (-) False sema3d
XM_026927332.2 mRNA upstream 75175 8886228 ~ 8925270 (-) True sema3d
XM_026927453.2 mRNA upstream 238216 9049269 ~ 9075959 (-) True si:ch211-233h19.2
XM_026927775.2 mRNA upstream 268986 9080039 ~ 9082609 (-) True tmem243a
XM_034305452.1 mRNA upstream 268986 9080039 ~ 9082605 (-) False tmem243a
TU114125 other downstream 299756 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1163896 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 1620504 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 1912653 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 2583845 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 1457424 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 1457424 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2776948 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 3501029 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3586634 12397687 ~ 12405281 (-) False znf143b

Expression Profile