RNA id: XM_026927061.2


Basic Information

Item Value
RNA id XM_026927061.2
length 2491
RNA type mRNA
GC content 0.51
exon number 18
gene id sema3ab
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8777992 ~ 8841060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTATGGCTTCAACGTAAACCTGCAATCTTTCCTCTGAGTTGGAAGAACCATCGCTGCAACTTTATTCTGCCCATGACAAGCTTGTCCAACTGTGCTGCTCTGAAGATCTGGACCTCTGTTAGTAGCTGTGTATCTTTGGGTTCATCATGGACTACTTTTGGGGGATGGCAGTGCTGCTGTGTGGGCTCTGGACACCGCAGAGAGGAGCCGATGCTCAGCGTGCCAAAAGCAACGTGCCCCGACTCAAACTCTCCTACAAAGAAATGTTGGAGTCGAACAACTTGTTTACTTTCAACGGACTGGCCAACAGCTCAGCCTACCACACATTTTTACTGGATGAGGAGAAGGGTCGGCTCTTTGTAGGAGCAAAGGACCATCTCCTGTCATTCAACCTGATAGACATCAACATGGACCAGCAGCTGATATCCTGGCCTCCATCTTCATCACATCGGGATGAGTGCAGGTGGGCTGGAAAAGATGTGCAGAAAGAGTGTTCAAATTTTATAAAGGTGTTGCAGCCATTtaatcacactcacctgtacGCATGTGGAACAGGAGCCTTCCACCCTGCCTGTGCTTATGTGGAGGTGGGCAAACGGCCAGAGGACAACGTCTTCAGGCTGGATTCATCACACTTTGAGAATGGCCGAGGGAAAAGCCCCTATGACCCAAAACTCATGACTGCTTCACTACTTattgATGGTGAGCTGTATTCTGGGACAGCAGCCGACTTCATGGGGCGAGACTTTGCTGTTTTCCGAACGTTAGGAAAGCATCATCCAATCAGGACGGAGCAGCATGATTCCCGGTGGCTCAATGAACCTAGGTTCGTAGGTGTCCATCTCATTCCTGAGAGCGATAACCCTGAAGACGACAAGATTTACATGTTCTTCAGAGAGAACGCCATTGACGGAGAACAAACTGGCAAAGCCACACATGCCAGAATCGGGCAGCTGTGTAAAAACGACTTTGGAGGTCACAGGAGTTTGGTGAATAAATGGACCACGTTCCTGAAAGCTCGGCTCATCTGCTCTGTTCCAGGCCTTAATGGAATTGACACACACTTTGATGAGCTGCAGGACGTCTTTCTGATGAGCTCAAAGGACTCTAAGAATCCTATCATTTATGCAGTGTTCACAACATCCAGTAATATCTTTAAAGGCTCagcagtgtgtatgtacagCATGGCTGATGTCAGGAGGGTGTTTTTGGGTCCCTATGCTCACCGGGATGGGCCCAACTACCAGTGGGTGCCCTTTCTAGGCAGAGTGCCCTATCCACGCCCTGGCACGTGTCCAAGCAAAACCTTTGGAGGGTTTGAATCCACAAAAGATCTACCTGATGATGTTATCACTTTTGCCCGAAGTCATCCAGCCATGCACAACCCAGTGCTTCCCCTCAACAACCGCCCAATCATTGTTAAGACTGATGTGGATTACCAGTTCACACAGATCGTTGTGGACCGAGTGGAGGCAGAAGACGGACAGTACGATGTCATGTTCATTGGCACAGATCTTGGCACAGTTCTTAAGGTGGTCTCGATTCCCAGAGGCACTTGGCATGACCTTGAGGAAGTTTTACTGGAAGAGATGACTGTGTTTAGGgaACCAACAGCTATAACTGCTATGGAGCTTTCCACCAAACAACAACAGCTCTATCTAGGCTCGAATATCGGCATTTCCCAGATGCCACTGCACCGCTGTGACGTTTACGGCAAGGCCTGCGCTGAATGCTGTCTAGCACGAGACCCCTACTGCGCCTGGGATGGCTCGCAGTGTTCCCGATACTTCCCCACCGCTAAGAGgaggacTCGGCGCCAAGATATCAGGAACGGAGACCCTCTCACTCAGTGTTCGGACCTGCAGCACAATGACGAGGAGAATGGTGAGAGCACCCTGCTGGATAAAACAGTGTATGGGGTGGAGAACAGCAGCTCCTTCCTGGAGTGCAGCCCTAAGTCTCAGCGTGCTCTCATCTACTGGCAGTTCCAGAGACATGGGGAGGACCGCAAACAAGAGataaaGTCTGACGAGCGAGTGATGGGAACTGAACAGGGTCTACTGATCCGAAGTCTGCTTCCGAAGGACTCGGGTGTGTATTACTGCCATGCAGTGGAACATGGTTTCATCCAGACACTCCTGCGCCTGACGCTCCACGTCATCCCCACTGATCATCTGGACGATCTCATACAACGGCCACCCTCAGACGCCAGCCACTCTTCACATGCCAAACTGTGGTACCAGGACTTCCTGTCTCTGATTGACCCGCCTGGCCCCAACAGTGTGGACCAGCTATGTGAGCAAGTgtggaagaaagagaggaagcaGCGGAGGCAAAAGGCCCACCACCTACATGCTAGTCAATCACATGCTGCCCAGCTTCTTCACACCAGCCAGTCCAACTCCAGCAAGTGGAGGCTTATGCAGGACAGCAAGAAAGGGCGCAATCGTAGGACCCACGAGACACCGCGGGCACCTCGCAGTGTGTGA

Function

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0005576 extracellular region cellular_component
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114213 lncRNA downstream 17803 8754558 ~ 8762596 (-) True G96220
TU114155 lncRNA downstream 150276 8629900 ~ 8630123 (-) True G96170
TU114151 lncRNA downstream 167385 8612815 ~ 8613014 (-) True G96166
TU114124 lncRNA downstream 325679 8395812 ~ 8454720 (-) False LOC113534821
XR_004578351.1 lncRNA downstream 435741 8326831 ~ 8344658 (-) True LOC113534629
TU114448 lncRNA upstream 243267 9084327 ~ 9086671 (-) True G96421
TU114462 lncRNA upstream 333604 9174664 ~ 9215815 (-) False cotl1
TU114463 lncRNA upstream 333604 9174664 ~ 9215815 (-) False cotl1
TU114521 lncRNA upstream 485621 9326681 ~ 9338784 (-) True G96484
TU114736 lncRNA upstream 575962 9417022 ~ 9417414 (-) True G96679
XM_026927063.2 mRNA downstream 37836 8702731 ~ 8742563 (-) True sema3e
XM_026927096.2 mRNA downstream 92758 8608017 ~ 8687641 (-) True pclob
XM_026926943.2 mRNA downstream 186126 8495560 ~ 8594273 (-) False LOC113534270
XM_026926942.2 mRNA downstream 186127 8492989 ~ 8594272 (-) False LOC113534270
XM_026927334.2 mRNA upstream 45168 8886228 ~ 8925270 (-) False sema3d
XM_026927332.2 mRNA upstream 45168 8886228 ~ 8925270 (-) True sema3d
XM_026927453.2 mRNA upstream 208209 9049269 ~ 9075959 (-) True si:ch211-233h19.2
XM_026927775.2 mRNA upstream 238979 9080039 ~ 9082609 (-) True tmem243a
XM_034305452.1 mRNA upstream 238979 9080039 ~ 9082605 (-) False tmem243a
TU114125 other downstream 302163 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1166303 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 1622911 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 1915060 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 2586252 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 1427417 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 1427417 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2746941 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 3471022 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3556627 12397687 ~ 12405281 (-) False znf143b

Expression Profile