RNA id: XM_026927063.2


Basic Information

Item Value
RNA id XM_026927063.2
length 3982
RNA type mRNA
GC content 0.48
exon number 17
gene id sema3e
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 8702731 ~ 8742563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagagagagggcttgGCAAGAGTCCATGTTAGCAGCAGGGGAGTGGAGCAGTCAGTAGGGGAGGATCACTGAGTGGCACGTGGAGAGGCAGTATTTCACTGAGCTGGAAGAGATACAGAGCTgcggaggaggagagagaaagagagagagaaggtggagGCAAAAGACAAGCCTTCTTCTCCTTAGTAAGACAAGTGAGCAGTACACCTCGAGCGCTCCAAAATCAGCACAGCCCttgactgacacacactcgtGCGTACACACCCACAGCCAGCACGTTTGAGGTTGTGGAATGCGCCTGCTGTGGTGGAGACTGACAGGGCAAACAGCCAGCGTTGAGTCACAGCACTGCGCTTTCTATAGAAGAACACCGGCTGCGCCCTGGAAACACATACAGAAAGCTTTGCACATTCACCCCTGATTGCTACGGACATAACACAGATACCTCCACACCCAAGGATTAatgagtgatgcagcagtgacTGCATGCAAACCGGAACCGGGGCTGTCATCTCTGCGCTGGATGATGGATGCTCCTTGTCCTGGATGGTAGGCACTGAGGGACATTTCAACAGGATAGTGTatacagcgtgtgtgtgagtgtcaggATGGCGGCAGGATGGATCTGGACCCTTGTACTTTGTGTGTCACTGTGGAAAGAGTCTTCTGTACATGGAGCAAAGAACAACTATCCGAGATTACGACTGTCCCATAAAGAGCTGTGGGAATTGAACAGGACGTGGGTGTTCCAAGCGGCTGAAGGGAGTCTGCAGCACTACAGTATGCTGCTGGATGAGACTCAGGAGAGGCTGATAATTGGAGGGAAAGACACACTGTACTCTCTTAACCTGGACAGAGTCAGTGAGCCTCACAGagagATTCACTGGGCTAGCTCTGAGGAGCAGGTGCAGGACTGTCTCATGCAGGGCAGAGAGAAGCCGGAGTGTGCTAACTACATCAAGCTGATCCAGCCGTATAACAGCACTCACCTGCTAGCATGCGGGACTGGAGCCTTCAGCCCGATGTGTGCCTACATCAGAGTCAGCCATGGAGCAGAGgAAGGAGTGTTTCAGCTGGAGTCAGAGCACATTGAGAGTGGCAGAGGGAGATCCCCGTTTCATCCCAACAGCCCAACAACGTCCACGGTGTCCAGAGATCAGCTCTTTGTAGGGCTATACACTGATTACTGGGAGAACGATGCGGCACTGTATCGCCTTGGCAGTCACAGCTACACCAGGACGGAAGTAGGAGACAGACAGCAGCTAAATGAGCCCAAGTTTGTTGGTTCTGTGGTGATCCCTGATAACGATGACCCTGCTGATGACAAAGTTTACTTCTTCTTCACTGAGAAAGTGTCCACCACAGAGGCAGGAAATAAAGCTGTCTACAGCAGGGTGGCCCGTGTATGTGCTAATGATCAGGGTGGTCAGAGGATGTTGGTGAATAAGTGGAGCTCTTTCCTCAAGGCTCGTTTGATATGCTCAGTGGCAGGACCCAATGGCATCGACACCCACTTTGATGAGCTGGAGGACATCTTTGTGCTGAAGAGGAAGAATGAGAAGAATCCTGAGATCTTTGGTCTATTCAGCACTACCAGTGCGGTGTTTAAAGgttatgcagtgtgtgagtataACATGGAGGAGATCCGAGCTGCCTTTAATGGTCCGTTTGCACATCGAGAGCAAACTGACCACCACTGGGGTGTGTATGAAGGGAAGGTCCCATACCCTCGCCCTGGATCTTGTGCCAGTAAGATTAATGGAGGTCAGTTCTCCAGTTCTAAGGGGTATCCAGATGAGGTTCTGCGTTTCATCCGTTCCCATCCCCTCATGTTCCAGCCAGTGCAGCCGGTCCACAGGAGGCCCATCCTGCTGGACACAGATGGTGGACGCAGGCTCACCGAGATCGCTGTAGACCGAGTGGAGGCTGAGGATGGACATTATAATGTCCTGTTCATTGGGACAGATGATTCAGTCGTGTTAAAATTGATCACCATTTTCAACAAAGAGGCCAACACAATTGAAGAAGTGCTTCTGGAGGAGCTACAAGTGTTCAAGgtTCCAGTGCCCATTACAGAAATTATCATCTCAAATAAAAGGCAACATCTGTACGTGGGCTCAGAGTTGGGAGTGACGCAGGTTCAAGTGCACCAGTGTGGCCTGTATGGCTCAGCCTGCGCCGACTGCTGCCTAGCCAGAGACCCATACTGTGCCTGGGATGGACACACCTGCTCCAGATACATACCTGCtggcatttacacacacaagagGCGATTCAGAAGGCAGGATGTCCGTCATGGCAATGCGGTGCAGCAGTGTAATGGTCTCCAGCTGAATGaggcTCAGAGCATATCAGAGAAATTAGTGTATGGAGTGGAAAAGAACAGCACTCTGTTAGAGTGTAGAGCTCGATCCCTACAGGCTGTACTCACATGGTACATGGTGAAAGGAGTAGACTTGGAAGAGATAAAAGGCGATGATCACATTATTCAGACGCCTCATGGCTTGTTGTTTCTGATAACAAAGAAGTCTGACAGTGGTGTGTACCTGTGCCAGTCTGTGGAGCACGGCTTTGTCCAGACCATAGCCAGGGTGACTCTGGAGGTGTTGGAAGAGGACACACTGGAGAGTCTGTTCCACAGAAGGGACTATGACGAGAGCGAGCCCCATCTCCGTTCTCCCCCCTGCCCCTTTCCAAGCCGCCCATCTGCCCCTTCCTCCAGAAAGCTCTGGTATAAAGACTTCATGCagctgattggttacagtaaCTTCCAGCGGGTGGAGCAGTATTGTGAGAGGGTGTGGTGCGCATCcgaaaagaagaggaagaagctcAAAGGCACGCCGTCCAAGTGGCAGTATTCCCATGGGGGTGAGCGGCGTGGGAAAGCTCGGGCACCCAGACACACACGGGACTAGTGAAGAGCCCGATATACCCTGAACTGAACAGACAGACCACGGGGTTGCGTTCACACATCCAGATAATATTCAGACTTATTTTTGCCCATTATTGTGTAAGATTAAATTGAAAATTAAGCCAAATTATGTTTGAGTTTTAGTAGTGTGACCTAGGGATGCTTCTCCAGACGCAATTGGATCCTTTTGTGCTATTCATTGTCAAGGAATTTTcccacctaaaaaaaaaacaaaaaaaaaaccttaatgtgtgtgtctggagaTCTGGTCCTTGGTGTTTGGTTTGGAATGTACTAAATGATAGAAGGTGTAGaattaatgtatatatgtaactGTGCTTGGTGGTAAAGCTCATTTTGAACATTACAGTCATAAGCTGATAGTGAATTTACAGATACAGGAACTTGTTTAGGTGAGTCTCCTAAAATGAAACACAGTGACCCCACTGTTTCctgtcacacactgacaaacaTGGGCTTGCAGTGCTTCCATTTACAATGGCGTGTGCTCTCATGTGAGAAGCAACAGAATAACTTTTCCTTGGTTGACAGCCAAAAATTTGGATTCAACAACGATTTCTTCCTCCTGAATAGGATGACTCATTACTCTGAAAATAGTTAACACTGTTCATTCTCAGATTCTCTGCGCACAAAGACAGGCAACGTTTTCTGCACATACTTTACGTATTTATCacttgtattttatattaaattattgtagTTGGTGTTTGGTAGTGGTTTAGATGTCCCCATTAGTTTGAACTGGAGATATGTTACTGCTTGTGTTTAGTGCTTATAGGTTTTTAGATCACTGATGTGTAATTACCATTTTTAAAGGCCCATTTACACAACATTAAGAACACAGTGTTCATGAACAACATGAATGACCCATTGAACTCAAAGACTGTTTCCAGCATCATGAATCATGTTAGGATTCTATacttatgtaaatgtaatgtattgtatAAAATGGAGTGAATACCAACATAGAAGTCCTTCTTATTTTCATGTAGGCTACTCAAATAAATGCCATAAACCATTGCGACATGCAACTTGTTATACAAAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114155 lncRNA downstream 72608 8629900 ~ 8630123 (-) True G96170
TU114151 lncRNA downstream 89717 8612815 ~ 8613014 (-) True G96166
TU114124 lncRNA downstream 248011 8395812 ~ 8454720 (-) False LOC113534821
XR_004578351.1 lncRNA downstream 358073 8326831 ~ 8344658 (-) True LOC113534629
TU113851 lncRNA downstream 619159 8080216 ~ 8083572 (-) True G95907
TU114213 lncRNA upstream 11995 8754558 ~ 8762596 (-) True G96220
TU114448 lncRNA upstream 341764 9084327 ~ 9086671 (-) True G96421
TU114462 lncRNA upstream 432101 9174664 ~ 9215815 (-) False cotl1
TU114463 lncRNA upstream 432101 9174664 ~ 9215815 (-) False cotl1
TU114521 lncRNA upstream 584118 9326681 ~ 9338784 (-) True G96484
XM_026927096.2 mRNA downstream 15090 8608017 ~ 8687641 (-) True pclob
XM_026926943.2 mRNA downstream 108458 8495560 ~ 8594273 (-) False LOC113534270
XM_026926940.2 mRNA downstream 108459 8492989 ~ 8594272 (-) False LOC113534270
XM_026926942.2 mRNA downstream 108459 8492989 ~ 8594272 (-) False LOC113534270
XM_026926939.2 mRNA downstream 108459 8492989 ~ 8594272 (-) True LOC113534270
XM_026927060.2 mRNA upstream 35429 8777992 ~ 8811053 (-) True sema3ab
XM_026927061.2 mRNA upstream 37836 8780399 ~ 8841060 (-) False sema3ab
XM_026927334.2 mRNA upstream 143665 8886228 ~ 8925270 (-) False sema3d
XM_026927332.2 mRNA upstream 143665 8886228 ~ 8925270 (-) True sema3d
XM_026927453.2 mRNA upstream 306706 9049269 ~ 9075959 (-) True si:ch211-233h19.2
TU114125 other downstream 224495 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 1088635 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 1545243 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 1837392 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 2508584 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 1525914 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 1525914 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 2845438 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 3569519 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 3655124 12397687 ~ 12405281 (-) False znf143b

Expression Profile