RNA id: XM_026927085.2


Basic Information

Item Value
RNA id XM_026927085.2
length 5290
RNA type mRNA
GC content 0.44
exon number 18
gene id fgd4a
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 9625063 ~ 9692085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATGACTATGATAGTGGCTTGTTCTGTGAACTTCAGGACGAACAGAACTTCGATCACCACTCACATATTGGAATATTGACACAAAGAGGCAGGCATCCAAACAAAGTCTGCCACTTCTTCCATCGTTATAGCAACCTAGAagtttttctagaaataaacacataatgGGCAGTGGATTGAGAAAAATGAGACGTCGTCAGAAGTATTGGTTTTGTCGAACTAAAGagaaagcaaGCAAGGCGAGCTGCTTCCCCTCCAAATCCCTTGATGAAGAGGAGGCTTGTGTGGGAGTGAAGATTGCTGAGGCACAAGatctTGGCAGTAGGCCTGCAGATCGAGCCAGTCGAAATGAGAAGCCACGTCAGGGGAGCAGAGCAAGTGACAGAAGCTCGGCAAGAGTAAATGGAAAAGGCTCAAGACGCCAGCTTCCTCAGCGTATCAAACCACAagTGCCTCCTAAACCAGCACACCTCCAGACTCCGGTGACCGAGCTGTGTAAGCCGCTGGGCAGGAGCTCACCCTTTAGCTCCAAGATGGAGGAgggcggaggaggaggaggaggaggaggaggaggagggggaggagggggaggaggaaaAGGCAGAGTGTCTGACCTCATCAGTCGCTTTGAGGAAAACAGgcacacagacaGGAGGGACGGCTCTCCTCAGAAACACGCACCCAAACCTGCTAAGAGCAGTCCGGTACAGAGGAGTAGCCAGAAACCAACGGATACTAAAGAGCAGACTGAGGACAGCAGCACCAGCCATGACCACATGCCCTCTACCAATGGAGTGTTAGGTCAGATGGACAGAAACAGCAATGACAGTGGAGCTGTGAGACCAGACGGCGAACCGCTGCTGAATGGAGACATGGTGGAGCAACGTTTGGAAGAGGTTGTAGACGCGTCTCAGAGTGTCATCGAGACACCTGAGAAAGAAGATGAGAGCAGGAGAAccgagacagaggcagagacagagaatgaggCCAGTACGGATGACAGGGGTATGGAACACAAGGAGACCAATGAACAGAAGCTGTACAAAATCGCAAATGAGCTTCTGCAGACAGAGAAGGCCTACGTTGCAAGACTAAATTTATTAGAGgtgttttgtgCCAAGCTGATGGAGGAGGCAGGAAAAGGCACGTTCCCTTTGGAGGTGGTGAAAAACATCTTCTCCAATATCTCCTCCATCAGTACCTTCCACAGCCAGTTTCTGCTGCCAGACCTGGAGAAACGCATGGGAGAATGGGAGACGACACCTCGAATCGGGGACATTCTGCAGAAACTTACACCCTTTCTGAAGATGTATGCAGAATACGTGAGGAACTTTGATAAAGCCATGGAGCTGCTGAAACAGTGGACAGACCGCTCGCCTCAGTTTAAGACCATTATTCAGGACATCCAGaaacaggaagtgtgtgggAGTCTGACGCTGCAGCATCACATGCTGGAACCAGTACAGAGAGTACCAAGATACGAGATGCTCCTCAAAGACTACCTGAAGAAGCTTCCTCAGGACCACGTGGACCAGCGGGACGCTGAGAAATCGTTGGAGATTATTGCCACGGCAgccacacactcaaacactgcAATTCGCAAATCTGAGAATCTGAAGAAACTGCTGGAGATTTATGAGATGCTGGGGGAGGAAGAGGACATTGTGAATGCCTCCAATGAGTTTATAAAGGAGGGCCACATTCTCAAACTGGCAGCCAGGAACACTTCAGCTATGGACCGATACCTCTTTCTGTTCAACAACATGCTGCTCTACTGCGTTCCCAAGTTCAGCCTGGTGGGCCAGAAGTTTACGGTGCGCACGCGAATCGGCATCGATGGGATGAAGGTGATGGAGACGTATAACGAGGATTACCCTCATACGTTCCAGGTGTCTGGGAAGGAGCGTACCCTCGAGCTGCAGGCCAGCTCCGAACAAGATAAAGAGGACTGGATAAAGGCATTCCAAGAAACAATAGAGATCTTTCACCAAAAGAATGAGACATTTAAAATGGCTGCTAAAGAAGTGGAGGAAGTGTCGATAACAGACCTGGGAAAACGAGCACCCCGCTGGATTCGAGACAATGAGGTGACCATGTGTATGAAGTGTAGGGAACCTTTCAACGCTCTCACCCGCAGGAGGCATCACTGTCGAGCTTGTGGCTATgtgGTATGCTGGAAGTGCTCAGACAATAAGGCTCCTCTGGAGTACGATGGCAATAAGATGAATAAAGTGTGTCGAGACTGTTACTCCATTTTAAAAGGCCACACAGAGAGCGAGGAGAAGGAGGGCAAGAAGAAAGGCATTCTGGAGATCGAAGCAGCACAGTTCTCAGGCAGCAGTATAATGTGTGGCTTCCTGCAGTACTGTGAGAAGAATAAACCCTGGCAGAAAGTCTGGTGTGTTATTCCTCAGAAGGAGGCTTTAGTGCTCTATCTGTATGGAGCACCGCAGGATGTTAAGGCTCAGTCCACCATCCCGCTGCTGGGTTACTCTGTAGACGACGCTTCCCGACCCACCGATCCTCCAGCCAGTTTCCGTCTGTCCCAGTCGAAGTCTGTCCACAGCTTTGCTGCTGAGAGTGAGGAACTGAAGCAGCGCTGGCTCAAAGTGAtccgagtgtgtgtgacaggagaAGTGCCCACAAGCCCGCCACCTACAGAGACACACGCCGCAGAGAGCAGCCGGGAGCCGAGCACGGAGAGCCTCTAAGAGAAGAACGAGAGCACACTGTTGGTGCCAAAGACACAGACGGAGAGAGGAGAGGATCCCAGAGACTACACACAGACAAGGCTGTCAATCACTAACACGCAGCATACAACGCGATGGGGACGAGCTGTATTACAGCCATGCTGGATTTAatctgtgagcaaaaaaaaaatgatgctctCTCTCTAAAGCTGCTCTGAAACACAGCAGTCCAAAGATGGCACACACAAGTGCTTTGAACCTATACTGGTGCTCTAGGATGGTTAGTAAAatgatatgtatatgtatgagtACACTCTCATTTCCTCACATCATGCTTTCATCCTCAGCCTCTGCAGTACATTTTAGTGCAGGCAGTGCTGTTATTCTAGTGCGGTATTCTTATCTACGcattgtgtatatattgtagCATTCCGTCTGTATGTATGGATATGCCCTCACTGTCTCTTTTATAAAGATGTGAAGTGAATCCAGGCCTCTTCGATGCTGAAGGCAAGTCTGAGTTTAAATTCAGGCTGCCTCAGTACCCTAGGAAGAATCATTATTGCTCTTTctaggatctttttttttcccatacgGACCACAAATCACATTTAGTTACCCCTCGCAATAAACCCGGATCACGTCACTGCACCTGGAGAACAGCAGGAGTCGTGATGCCACATTTATTAACCAGCATCTATAACCTCATTCCATCCCAGCACAAGAATCACTCGGCTAAAATGTGCTCCATACAGACTGCAAGAAATGTGCAATGAGAGTCGTGCACTCTCGTGAGCAAAGGACACGGCAATACCACAGTAAAGTGTTGCATAAGCTGGGTAAATCCCTCCTTTATAATAGACTGTCTACTGGATGGTCTCAAACTATAGTTTTACCCAAGCAGGTGCATGTGTTGCCTtcagttttagaaaaaaaaaatcattctaaaTATCAATGataattaaaggaatactccagtgtttaTCAACCTAATATCTTTATAAAGCATCTGTAACATAACAGTTATCATAAATAAGAATGTATACACTTTACCCtgtacagaaaagaaaagaacaaaaaagctATAAATTTAGTTCTAATTGAAGtttaagggcagttgttgaatccTGTTGAACACTATTTTGTATACACACCAAATTGGCGCAAACGCACAATTATGAAATCTGCTCACTCCGAGTTACTCAACTGGGTATCGTGTCCTAAGAGCGTTGTTACCATATCAGAAACCATGTCGTATTCTGTCCAAACATCCTCCTGCGTGTTAAAACTAGGCTATGTGTAATTAATTTGAGTCTTATCTCATCAGTTATAGCATGAATACCTGATTATATAAACTTAAAAAGAATTTAATCCTATGCAGTATACACTGTGGACCATGATAAGCAGTTGCAGTGTTGAGTAACCTTGTTAAATTACTAATACGAAAGCCAATTTTAGTATGCGCTAATGACACTGATTCTAATTATGTGCTACTCTTGGTACCAGAGTTCTTATGTATTTTCATCCAACGTTTGGTATTTCTTTCAGTTAATCAAGTTTGTCACAAGGTATAACTTCATTATCAGACCTCAAAACATTAAATAGAATGTTCTATAAAAATCTGTTtcagatttaacatttatagactGCCCTTataactgcccttagactttcaACACATTTCCCAGTACTGATTAGTCAAACCTAATGATTGCCTAAATGTGCTGAATTTcttaatcacacatacacttcatGCAGACTTAATAGAGATTAAGatttcaaaaatattcattacactgaagtattcctttaaagtgTTTATCATCCACAAGCACAgatcatttcctttctttttctatgttggctgtgtttgtctgtctgctcTGCCTTTAGACACATGCTATTGAGCCGGCCAGTGGGATGTGTGTTTTAACGCTACTGATCAGTGTCTTAAATGACTTCCTGTACAATCAAGGACAAATAGACCCACGAGCTGGGAgaaacatgtaaatgttttatgaaatactgtaattaattttattatttaagagtAATTTATAATTGATGTGCATGATTTTGAAGAACAGTAGCACAAAGAAtggtttcttattttttcctcttcctcaaTTTTATTGTCCATTTACCAAGTGCTTGGTATACAGAATCCCATCATAAACTTGGTCCTATCTCTTTTTCCTTCCACTCAGTCTCGTATTATTGCCAGCTGTATGAGAAATGGTCAGTGTTTTATCAacagtatattgtatatgaTATTCTCATTCAGAACATATAGTCTTATGCACAGAGACAAATCCTGAGGCCAAACTGCAggttgcatatacagtatattgtagtGTTTCAGGTATGTAGAGATCATGCATAATGCACAATACATCACTAGTGTAACCGGGCAGGCTTGCACTTTTGTAGCTGAGACTTCACTGTGTTGTGTTCTTGCAGGAAACCTGGAGTCGTCGGGCCTCACTTATTAAAACGTTCAGTCTGGTTTGATCTAAATATCCATTCATCTGATCTCGTATCAAAAGGGACCAGATTAATGAAACCTAAGAGCGACTAGAAAATGAGAGACATGaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114733 lncRNA downstream 121122 9417586 ~ 9503941 (-) False G96677
TU114732 lncRNA downstream 121122 9498305 ~ 9503941 (-) True G96677
TU114736 lncRNA downstream 207649 9417022 ~ 9417414 (-) True G96679
TU114521 lncRNA downstream 286279 9326681 ~ 9338784 (-) True G96484
TU114463 lncRNA downstream 409248 9174664 ~ 9215815 (-) False cotl1
TU114861 lncRNA upstream 65924 9750882 ~ 9772020 (-) False LOC113534661
TU114926 lncRNA upstream 134429 9819387 ~ 9884455 (-) True G96840
TU114927 lncRNA upstream 207568 9892526 ~ 9918433 (-) True tmtc2b
TU115159 lncRNA upstream 386595 10071553 ~ 10095358 (-) True G97054
TU115237 lncRNA upstream 582020 10266978 ~ 10271950 (-) True ttc38
XM_026927329.2 mRNA downstream 210676 9349891 ~ 9414387 (-) False tbxas1
XM_034305376.1 mRNA downstream 210923 9349891 ~ 9414140 (-) False tbxas1
XM_026927328.2 mRNA downstream 214520 9349891 ~ 9410543 (-) True tbxas1
XM_026927010.2 mRNA downstream 404859 9217244 ~ 9220204 (-) False LOC113534316
XM_026927009.2 mRNA downstream 404861 9217244 ~ 9220202 (-) True LOC113534316
XM_026927780.2 mRNA upstream 9119 9694077 ~ 9732778 (-) True bicd1a
XM_026927782.2 mRNA upstream 10784 9695742 ~ 9732426 (-) False bicd1a
XM_026927611.2 mRNA upstream 66022 9750980 ~ 9771998 (-) False LOC113534661
XM_034305082.1 mRNA upstream 66022 9750980 ~ 9771620 (-) False LOC113534661
XM_034305081.1 mRNA upstream 66022 9750980 ~ 9771620 (-) True LOC113534661
TU114125 other downstream 1146827 8468301 ~ 8478236 (-) False LOC113534821
XR_003403522.2 other downstream 2010967 7442373 ~ 7614096 (-) False shank3a
XR_003403498.2 other downstream 2467575 7147944 ~ 7157488 (-) False LOC113534453
trnap-agg other downstream 2759724 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 3430916 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578315.1 other upstream 583519 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 583519 10268477 ~ 10294823 (-) False ttc38
XR_004578339.1 other upstream 1903043 11588001 ~ 11610964 (-) False arntl2
TU116624 other upstream 2627124 12312082 ~ 12314525 (-) False admb
XR_003403510.2 other upstream 2712729 12397687 ~ 12405281 (-) False znf143b

Expression Profile