RNA id: XM_034305150.1


Basic Information

Item Value
RNA id XM_034305150.1
length 4810
RNA type mRNA
GC content 0.43
exon number 9
gene id ets1
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6993136 ~ 7035230 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCACTGAGCGCTCTTTATCCTTCTGTTCCCAAAAGACGCGGCGCGCGCTTCAACGCCAGGTACAACGCACGAAAGCGCTGAGTCGATCACTTCCACGAGTTATTGCACCTCAACCACGGCCTGCAGCGCGGCTCCACAGACCACCATGAGTTACTATATGGATCCAGTTTCTTCCTACCAGCTTCATCATCCAACTGACcatctgggtgtgatgAGACAGACTGGTGGGATGGCGGTGTCTATGGTAACGCCGAGTCAACTCCCTGGGGTGTGCCACCCCCAGCACGCACCCCCTGCCAGAGCTGCATATGCCCATGACATCACGCTGCAGGAAGTACCCAATGGCCCAGAGTTCTGCCCCAATGATCTGGAATGTGGGGATGTTCCCCTGCTGACTCCAGGGAGCAAAGAGATGATGTCGCAGGCTGTGAAAGCCACCTTCAGCGGTTTCACCAAGGAGCAGCAGAGACTCGGCATCCCTAAAGACCCCCGGCTGTGGACAGAAGGACATGTGAGAGAATGGCTTCTGTGGACAGTGAACGAGTTCAGCCTGAAGAACGTAGACTTCCTCAAGTTCTGCATGAACGGTGCCAGTCTTTGCGCACTGGGCAAGGATCGCTTTCTAGACCTGGCACCCGACTTTGTAGGGGACATCCTGTGGGAGCACTTAGAGATGATGCTGCAAAAAGGTTATGGCATTGAACACGCTCAGTGTGTTCCGCCTTCGGAGTACTCGGAGCCGGGCTTCATCACAGAGTCCTACCAGACCCTTCATCCGATCAGCTCGGAAGACCTGCTGTCACTTAAATTCGAGAGCGAATACACCAACGTTATTCTGCGTGACACGCCACTCAACCCACTTCAGGGCGACTACTTCCCcgtcaaacaggaagtgtcaCCTGACAACATGTGCGTGGGTCGGATCAGCAGAGGTAAACTGGGAGGCCAGGACTCGTTCGAGAGCACTGAGAGCTTCGAGAGCTGTGATCGTCTGACGCAGTCATGGAGCAGTCAGTCGTCATTCAACAGTCTGCAACGCGTCCCCTCCTATGACAGCTTTGACTCAGAGGACTATCCCACAGCCCTGCATGGCCACAAGCCCAAAGGCACGTTTAAAGACTACGTCCGTGAGCGCTCTGAGCTCAGCAAGGACAAGCCCGTCATCCCAGCTGCTGCCCTTGCGGGTTACACGGGTAGTGGACCCATTCAGCTGTGGCAGTTTTTGCTGGAGCTCCTTACAGACAAGTCCTGCCAGTCGTTCATCAGCTGGACAGGAGACGGCTGGGAGTTCAAACTCTCCGACCCCGACGAGGTGGCACGGAGGTGGGGCAAGAGGAAGAACAAGCCCAAGATGAATTACGAAAAGCTGAGCCGTGGTCTGCGCTACTACTACGACAAGAACATCATCCACAAGACATCAGGCAAGCGCTATGTCTACCGTTTCGTGTGTGACTTAAAGAGCCTTCTGGGATACACACCTGAGGAGCTGCACGCCATGCTGGATGTCAAACCCGACACGGACGAGTGAAACACCAGTCCCGGAGTACTGGGGCCGAGAGACTTTCCTCCCTTATCCTCACAACAGTGGGTGTTTATTTTGGGTCCAACCAAGTCCCGTCTTCATACCTAGTCATGGTTCCAGTCTTGTTTTGAGCTCATGACTGCAGCTATCGCAAAAGGACCCATTCCAAACCTTACCAAAGTTCATAGTCTGTAGCGTGTATCATAATTCAGCTCTGAAGAGAAAACAGTGAGTTTCCAGCAGAGCCGCCATTTTGACCCAGCAGCACCTAAAAAACAGACTGCAGTAGAGGGTGGGACTAGGAAAGAACGAAGGACTCGTTCCTAAAGTGGACATTGTATGGATGGAAAGTTCCGAAAATATGTTGCcaaagttacagaaaaatggaactttacagaaatacataaatatttactaTTAAGTTACTGTTGCTGTCTCAGAGTCCTCTGGACCatacaaaaatgattaaagtattttattttttattattatttttttctctgatatgTTGTGCCagtattacttttttaatttgtaaatgaagGATTGATAatgccaaaatgtttttttttcttccccatgTGTTTAGAGTCAAAGACTCTTCACATAAGTCGCATAACTGAAAACTCAGCAGGCGAGACCAGAGACTGCTATTTTACTCATGCAGTTCAGTTAAAAGAAAAGCCTCTCACTCAAACCGAGAACGGGTGACAGACACGACCGAAAGTAGCCGTTTTTCTGCTCGAGGGCGGCAAGCTGTGAACACACCCGCCCTCGACTTATGGGCAGGAGTGTTTCGCTTCTAAGCGAGCACAACTTAGGCAGCTGTTAAGCACGGCCCGTCTCAGATCTCCTTTTTCTAATCTCTAACGTTCAGACAAAGGACTTCAAGCATCTCTTGCCTTAGTTTTATGTCTATGTTACCACTCCTGTCACTCGCCTTCACGTCTTGTTTTGTCTGCGCCGTCTCTTGAGAGCACATGTGATGTAAACACGTCTGTAATCTTGCTGTCTGTAATGAGACAGAGTGAAGGATATTTAAGTGGAGCACAATAGAAATGTCATTTAACTGATCTAGTCCTCTTTTGTGAGTTGATTGATAGCAGGAAACAGGCTTCCTGATGAGCTGGGACCAAATTTATGTCCGTGTGTAACTTGTTTTAGTTCGTGTGCCTGAGGACAAAAAGCTGAATGTAATAGAGATCTTAGCCATAAGCCTGACGCAGGAGTTATTGATCACTGAAGTGAAGGTAGTGTGAGTGATTTGAGCATGGGATAGTAATGGATAATGTTGGATAGGCGTACGAAAGTAGGGGTGTAACAGTTTCAGACTGTTTTAAGATCGACATGTATGCGTtatgttaaagaaaatggtCAATGATGCTACTGCAGTTGTAGTGGCTTCAGATCTGAATAGCATTAGCACAGAACAAGGGCTGACCAATAACACAACtgaaatacaacaaaaatatattacacataGATACTGAATTGATTTCTATTACtaatataaataactaataaaacacaacagagcatgctgttacaaaaaaaaaaaaaatagatactGGGGTGTTGTAAAGTAGCCTGATGCAATgcattatttttccaataatctcatgtcctgaagtgttctattcctcttataacatgCAGTGAttcaccaacaattacaatctttttattaattaaagagcgacacttattttttatccatttctagttacatatattactgttttcatttatgttatagcagctagaatcattccctcaccagcctctctctcaattttccacaagacaaaaaagaagTTTCTTATTGTACAAAGAACCCACTAAGCACAAAGATCTCTGAATTTAAGACTTCCCCTGGTGGaaaacctgactgttacaaagcgctaacactggagactccttccattaatgctaaataaacttctccttaggaaaaatgtcaccatatcatgTTTTACTTATCATCTTTTTATATGGAGAGTTGGAAATACAAGTCTCCGCGTGTAGAAACAACaccgtattagaatgagcacctAATCAGCATTGTTGCTAGCAGTGTGACTCTGGTACCTGTTGCCTTTTCAGTCGTGGTTTGTGTTCCACAGAACAGGCGGGCTTCGTTGGGAAAAAAAACGCCGAAGTTAAGATGTCTCATATACACAATGTTATTGTTTACAGTGGTATGCTTGCCGCCTTGATGGGTTTCATTTTAGAATTGTCTGTTTGTACAGATTGTGTTTCAAAACGCTTTAATACAAGACCCCGAACGAACAAATAAGCCACTGTTAAAGCAGTAATAACACAGAAATGCGTGTGAGGTCTCGGAGCCGAAGGATTTGATGCTCATCCACGCTGCTGAAGGACCAAACCCACAttccagtcatttttttttttaaatctatctCAAATTAATTGTTATGCTGATTCTTTTACTATGGATTAAATTgggcagcaaaaaaaaaaaaaaaaaaatgattatgttACACAGCTAAATTAAAAGACGCATAGTGAgttgatgagatgagatgagtgAGATGAGTGAGTGTTCCTGGATCTATAATGGAAAGGAGATGGAGATATGGTTCATATACGTGGTTTTAGATTAAGAGGTTACACGTCAATGTAGTATTCTTACTTGTTTCCTTAACTCATGTTTCATAATGTCAGAAAATGTCACATGGTATTATGTTACTGTCTTTTTCTGCTTAATGAATGGAGATTAGATATTGTCTTAAATGTTGAGTATATTCTTTCTAAGAACAAAAATGTTGGACACATGTATCAAAAGCAACTATTTTAATTCACATGTGCATAAAGGTTGTGATGAGGGAAATCACAAAACCATTAATGAggaaaacgtttttttttaattcagttgtTCTTTTTTGTACAATTTAtagtgtttctgtattttttgttaaatgaaaatttttaatgtatttcgttcataaacatttgaatatttttcaataatttatattttataaactttGAAATAAGAGATGCAGACAGCTGGTgctttcatggaaaaaaaattgaggtAGAGCAGGACCAAATGTAgcgattttttttctttctctctctttttttttttttatacagaaaaagAAGTTGATATGAAATTTAAAGACCTGTCtgcatatacagttatatagaGAAAAGGCTGATGCTGGCCCATCATTAAGTTCTGCCGGAGAGTTTTATAAATGGTAGCTTCTATTTCTTATTGTACTTCAGATTCTTATGTTATAAAATGTACATGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112768 lncRNA downstream 323529 6664855 ~ 6669607 (-) True G94975
TU112547 lncRNA downstream 606852 6385400 ~ 6386284 (-) True G94761
TU112499 lncRNA downstream 711877 6272238 ~ 6281259 (-) False clmpb
TU112524 lncRNA downstream 725346 6263752 ~ 6267790 (-) True G94746
TU112523 lncRNA downstream 732991 6259340 ~ 6260145 (-) True G94745
TU112878 lncRNA upstream 51281 7086511 ~ 7088041 (-) True G95066
TU113068 lncRNA upstream 292258 7327488 ~ 7327703 (-) True G95227
TU113311 lncRNA upstream 301135 7336365 ~ 7336566 (-) True G95440
TU113322 lncRNA upstream 352502 7387732 ~ 7430763 (-) True G95449
TU113344 lncRNA upstream 385398 7420628 ~ 7421851 (-) True G95460
XM_026927410.2 mRNA downstream 312928 6476952 ~ 6680208 (-) True kirrel3b
XM_026927437.2 mRNA downstream 711606 6197243 ~ 6281530 (-) True clmpb
XM_034305461.1 mRNA downstream 875507 6048476 ~ 6117629 (-) False gramd1bb
XM_026927547.2 mRNA upstream 54743 7089973 ~ 7092426 (-) True LOC113534626
XM_026927662.2 mRNA upstream 75529 7110759 ~ 7113794 (-) True LOC113534708
XM_026927532.2 mRNA upstream 87353 7122583 ~ 7126393 (-) True LOC113534612
XM_026927302.2 mRNA upstream 96367 7131597 ~ 7140900 (-) True LOC113534467
XM_026927273.2 mRNA upstream 111270 7146500 ~ 7157482 (-) True LOC113534453
trnap-agg other downstream 127797 6865268 ~ 6865339 (-) True trnap-agg
trnam-cau_19 other downstream 798989 6194075 ~ 6194147 (-) True trnam-cau_19
XR_004578382.1 other downstream 2500397 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 2819542 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 3461445 3429028 ~ 3531691 (-) False kcnab1a
XR_003403498.2 other upstream 112714 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 407143 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 1433071 8468301 ~ 8478236 (-) False LOC113534821
XR_004578315.1 other upstream 3233247 10268477 ~ 10294823 (-) False ttc38
XR_003403495.2 other upstream 3233247 10268477 ~ 10294823 (-) False ttc38

Expression Profile