RNA id: XM_026927191.2


Basic Information

Item Value
RNA id XM_026927191.2
length 2190
RNA type mRNA
GC content 0.50
exon number 3
gene id ptx3a
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3123317 ~ 3129389 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCTCCAGCTCACTTTCCATTCagcttcagctcacacacacccacacaccagaGCGCTGCCAAAAGATTGCTCAGCAtttcacagagacagagagaaagagagagagagaaagagagagtctgAGTCAGAGCATACTTCAAACTTAAACCACACTCAGCCCAGACACACTgtagcttacacacacacacacacacacacacacacacagacacgcggTCATACTCTTGCAGCCGGGCAGCATGTCAGTGATGAGGATTGTCCAGGTGGTGTGTATGGTGGCTTTGGCGAGCGTGGTGATGCCTCAGGTTTACGATGATGCCATCGAGGTCAACTACGCCGATTCGTATTACAACGAGATCAGCGAAGGAGAGCAGAGCGAAGTGGACGCCCCCACTGACACTCCGGCCATTCCCTGCACGGCCCCTGAGTTCAACAAGTGGGACAAGCTCTTCACCATGCTGGAGAACTCGCAGATGAAGGAGAACATGCTGCTGCAGTACTCGGACGACATCGTGAAGGTGGGCCTGCAGTCTCTGCGTGCCGAGATACTGGAGATCATAGCGCAGAACAGCGGCTCTTGCATGGCTGCTGTGGAGACCTCAGCACGTCGGGCCGGAGCACACACCGAGGAGAAACTTCTGCAGGCCCTGGAGCAGCTGCATGACGCCGCGGCACAACAGCAGGCACAGCATGACGCAGCACTGCAGCAGATCCTGGAGGCCACACAGGAACAGGTGACACAGCTCGATAAGGTGGAGAAAAACTGCATACATGACCGGGTCAAGAGTTTCCAGACAAGAGATCTGGAAAAGGAAGACAGAGGACAACTGCAGGCCATCTCTGCTGAGCTGCAAAGCCTACAAGAGAAGCTGGACTTCTACACAAGAGCCACAGCTGGACAAATACTGCCCGCAGgGTGTGACATGGTCCTCTTCTTCCCTATGCGCTCTCCAAAAATTCACGCCGAGGTAATTCCCCAGCGCTCCATGAAGATCCGTGCCTTCACCATATGCCTGTGGATTAAACCAACCCAAATGCTTAACAAGACCGTCCTGTTTTCTTATGGCACCGTGACCAACCCACTGGAGTTGCAGCTGCTGCTCAGTGGGCGTAGTGCCCTCTTCACGGTAGGAGGTGAAGCACATTTAGTGGAGGCACGCGGTGCTGCAACCGAGGGATCGTGGGCACATTTGTGTGGGACCTGGAGCTCAGAACAGGGCCTGGCATCGCTGTGGGTAGACGGCCACAGAGCAGCGAGTTCTCCTGGTGTAGCCGAGGGGCATGAGATTCCTGCCGACGGTGTCACCATCCTGGGCCAGGAGTACACTGGTGAGGGTCTGGCCAAGAGATTGGGCTTCCAGGAGACGTTCAATGCTGATGAGGCCTTCACGGGGAAGCTGACTGGCGTGAACGCGTGGGACCGCGTCCTAGAGGAGGATGAGATTTCCGAGCAGGCGCGGGAGGATGGGCGGAGCTGCGGTTCCCGTGGCAACCTGGTAGCCTGGGGCGTGTCTCAGATCGTGGAGAGAGGAGGCGTCAAACTCATCTACTAGCTGCTcgagaaaaaaaacctgcacgAAAACTTCAAACACATGAGTAGCCCGCTGTACTACAACTACTACACTATCACTATCACATCCTGTTTAGATCAATGAAACCTACCCGCTTGTGGGGCAACTGTCTTCCATTTACACATTCCCTGACATTACAGAGTCTTGGGAACGGAGAAAACTATGAGAACCACAAGAACCAAAGAGCAAGGGAAAGAGTATTTGTAATGCCAAGTTTAAGAGAAAATAGGGACAATGTTCTCATTTCATCAATCCCAACCCGAAGACAGCCTGTGTATTCTTATTGCATTTATCAGAATGTTTACATTCAGCTAACAAACTTTTTGTCCCATAATCTTTTGaaactactttttttaaatgaagtaacTTGTTTTTCCTTTGTTGGTCTTTGTTTAACACAAAGATGTTCGCTACATTTTGGTAAAGGAACTGTGTAAAATGTTTACAGAGTCTCTTGGGACTTTACCTTCGTTCTGTTAATGTGAGGAAATGTActatactgtatttttgttaagAGGATGAAATGAACCTATATTGTatatagatctttttttttgtctattacTGAAGGAGTGAAATGGTGgagtttaataaagaaaatggtTAAATATAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110833 lncRNA downstream 28378 3094708 ~ 3094939 (-) True G93231
XR_003403502.2 lncRNA downstream 204495 2906327 ~ 2918822 (-) True LOC113534492
TU110609 lncRNA downstream 485316 2637007 ~ 2638001 (-) True G93036
TU110593 lncRNA downstream 496594 2626052 ~ 2626723 (-) False G93028
TU110595 lncRNA downstream 496594 2626052 ~ 2626723 (-) False G93028
TU110956 lncRNA upstream 69997 3199386 ~ 3200701 (-) True G93342
TU110963 lncRNA upstream 82202 3211591 ~ 3211804 (-) True G93349
TU110964 lncRNA upstream 82479 3211868 ~ 3212123 (-) True G93350
TU110967 lncRNA upstream 85870 3215259 ~ 3215465 (-) True G93353
TU110952 lncRNA upstream 97880 3227269 ~ 3235652 (-) True G93339
XM_026926991.2 mRNA downstream 55016 3064670 ~ 3068301 (-) True LOC113534302
XM_026927419.2 mRNA downstream 61822 3056704 ~ 3061495 (-) True LOC113534536
XM_026927431.2 mRNA downstream 70122 3048260 ~ 3053195 (-) True LOC113534544
XM_034305155.1 mRNA downstream 262358 2799623 ~ 2860959 (-) True pepd
XM_026927600.2 mRNA downstream 331954 2788862 ~ 2791363 (-) True LOC113534652
XM_034305331.1 mRNA upstream 113821 3243210 ~ 3291236 (-) True lekr1
XM_026927330.2 mRNA upstream 238012 3367401 ~ 3398528 (-) False tiparp
XM_034305276.1 mRNA upstream 238012 3367401 ~ 3398091 (-) True tiparp
XM_034305556.1 mRNA upstream 296329 3425718 ~ 3548751 (-) False kcnab1a
XM_034305553.1 mRNA upstream 296329 3425718 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 355019 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 372148 2749388 ~ 2751169 (-) True G93046
TU109993 other downstream 1354522 1768405 ~ 1768795 (-) True G92531
TU109968 other downstream 1475031 1628629 ~ 1648286 (-) False sema6dl
TU109967 other downstream 1479100 1627801 ~ 1644217 (-) False sema6dl
XR_004578380.1 other upstream 299639 3429028 ~ 3531691 (-) False kcnab1a
TU111361 other upstream 1043899 4173288 ~ 4173594 (-) True G93711
XR_004578382.1 other upstream 1363157 4492546 ~ 4492739 (-) True LOC117597618
trnam-cau_19 other upstream 3064686 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 3735879 6865268 ~ 6865339 (-) True trnap-agg

Expression Profile