RNA id: XM_026927227.2


Basic Information

Item Value
RNA id XM_026927227.2
length 5112
RNA type mRNA
GC content 0.41
exon number 24
gene id LOC113534432
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4642261 ~ 4677360 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacggtgaaGTGTGTACTCCACCTCACTGCATGCTGGAGCTCAGCTCATGGCGCTGTGTGAGGAGGAGGCAGTGATGCACACCGCTACAAGTTGAGCActgggtgtgtgtttctgggagatgtgtgtgtaacaggacACGGTGTGATCGTGAAGCTGCATGGACGGAATCGTGTAGAGGAGAAACCctgactccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaagctgagCTCCTGCGCTCGTGCATCTCCGGGCTCCACACCGCTCCGTCTCGCTTTCTCGCGGATTTGATGGATGCATGATCGGGAGGTGATGCCCATTTATGTCATCGATCGCAAATTTCCAGACACACCTGGTGAATTGCCACAGGCTGCTCCAGAAGGACAGCACACTATGGCTGAAAACAACACGCAAAAGAAGAAGTCTCGGTGGACGTCGCTGGAGATAGGCCTCCTGACCATCGTATCACTGCTTTTTGTAGTCGTGCTAGCCCTCATCATCCTCTTTGTTACGCAAAACAGCAGAAGTGATGGAGTTTGCACTACAGCTGACTGCACACGGTCGGCATCTCGCCTCATTGAGAACATGGACCCTACAGCAGACCCATGTAAAAACTTCTACCAGTATGCCTGCGGAGGCTGGCTGAAAAAGAACATCATCCCCGAAACCAGCTCACGCTACAGCACCTTCGACATCCTCCGGGACGAACTGGAGGTTGTGCTTAAAGGAGTACTGGAGAGAGAAGATAGCACCAGTGGTAGCAGCTCTTTAGCCAAAGCCAAAACCCTCTATAGGTCCTGCATCAATGAAAGTCTCATTGAACAGAGAGGTGGAGCGCCTCTAATCTCAATGCTGCCAGATATCTTCGAGTGGCCTATTGCAATGGACGACTGGGACACCAAATTTGGGGACAAATGGAGGGCAGAAGATGCCATAGCCAGACTGAATGAGAAATATGGGAAGCAAGTCCTAATTAGCTTTTTTATTGGCACAGACGACCGAGACTCCAATTCCCATATCATTCATTTCGACCAGCCAAGCCTTGGCCTGCCCTCCAGAGACTACTATGTCTGCATGGGGCCCTATGAAGAAGCCTGCGTCACGTACGAGAACTTCATGGTTGATCTCGCTGTGCTGGTCCGAAAAGACAGAGCCTTAGGGGTGAATGAGACAGAAATCAGAGAGGAAGTGACCAGGGTCATGCAGATGGAGAAGGAGATCTCTAATGCTACAGACACACCTGAAGACAGAAACAATCCTGTTCTCCTCTATAACAAGATGCCCCTGGAGACACTCAACACTAACTTCACACTTGAGTTCGAGTCCACAGTTTTTAACTGGACTCACTTTACTAATAAGATTATGGATACAGTCAGTCTTCCCATTGAGGACAGTGAGCAAGTGATCCTTTATGCCCCTAACTACTTGAGGAGGCTCAACCCTGTCCTGGCTAGGTACACAAAGAGAGACATCCAGAACTACATTGTGTGGCGTTTTGCTATGAACATGGTGGTTGGTCTGAGCAGAGCGTACAGAGACACCAggaaagcttttaaaaaagcCATCTCTGGTACCAGTTCAGAGGCAGCGATATGGAGGCAGTGTGCCGTCTACGTCAACAACAACATGGAGAATGCTGTTGGCAGACTGTACGTGGAAGAAGCCTTTGCTGGAGACAGCAAGGATATGATGGATGAGATGATTGCTGGCATCAGAGAGGTGTTTGTTAGTAACCTACAAGACCTTGCCTGGATGgatgatgaaaccaagaaagcTGCGGAGGAGAAGgcTCGAGCTATTCGAGAGAGAATCGGGTTCTCAGAAAACATCAAGAACAATACATATTTGGATGAGGAATACAAAGAACTAAGCTACAGTTCAGAGGAATACTTCGAGAACATCCTGAAAAATCTGGAGTTCGGTCAGAAGAAACGACTGAAGAGGTTGAGGGTGAAAGTGAACAAGGAAGAGTGGATCTCGGGAGCAGCGGTGGTCAACGCATTCTATTCATCCAGCAGAAATCAAATAGTATTTCCTGCTGGTATCCTCCAGCCTCCTTTCTTTGGTAAAGGACAGCCCCAGTCTCTCAACTATGGCGGCATTGGCATGGTGATCGGCCATGAGATTACTCACGGCTTTGATGATAATGGCCGTAACTTTGATAAAGATGGAGACCTGAAGGACTGGTGGACTCCGTCCTCAACGCAGAAGTTCCAGGAGCTCTCGAAATGTATTGTGGACCAGTACAGCAGCTTCTCCTGGGACCTGGCCAATGGACAGAATCTTAATGGGAATAACACCCTTGGGGAGAATATTGCAGACAATGGGGGCATTCGCCAGTCTTATCAAGCATACCAGAATTACATCAAGAAGCATGGAAAGGAAGCTCCATTGCCTGGAATTGACCTTAACCATGAGCAGCTCTTCTTCCTAAACTTTGCTCAGGTCTGGTGTGGAACGCATAGACCTGAACATGCCGTCAACTCTATTAAAACTGATGTCCATAGTCCAGGGAAGTTTAGGGTTCTCGGATCTTTGCAGAATTTCCCAGAGTTTGCCAAAGCTTTCCAGTGCCAGAAAAATGACTACATGGTGCCTGAAAAGATGTGCCGAGTGTGGTGATCACGCCACATACAGGGACAATAAGGGCATTTAACGAGCCCTCACTTCTCTCTTCTGACTGTACGACCACCACGGTCCCAGACTGGGAATGTCTGATGTTCCCCACAGGGTAGATAATACCTGGCTTCACCAATGCATTTCAATCATGTACAGACATGGGGTGCTCTCTTAGTCCACTCCGACATGTAACAATCAGTTAATTTTAGTCAGAATAGATCATCATGTGATCTGTGGTGATCTTCGGTTATTGTTTATAACAAGATGAAATGTAAAGGTAATGTCatatatttaaaactttttatgtTAATATCAAATCAAACTGTGAATCGGGGAGATCAGTAGCATTTTGTATGTTAAAGATGTATCAATATACATTTAAACTTTAATGGCAACTTTACTGAACTTTGGTTAGatgatatttgtaatattttacaaaacatCCCATACAGACCAAGAAAGgtaaaaaggaaaatgatttaaaaaaaagtacgtTAAATATATAGACACAGGGATATACTGTATCTAGGGTAATATTACAGGTTTTACAGTATTAGAAATCACAAATTcttaaatgttatattaatatgGCTTGTATTGCACTGAATGTTATATTGATAACAATGCAGGCAAACtttagttgaaaaaaaaaaaagtaattcttTGTTGAAAGGCTACAGGTTTATAACCATATTAGTCACTGATTTGATAGACTTGATAATAAATTTATATGTGCTTGGTGTATTATAGTACAAGCACATGGCAGAGTAAATGATATTTTGACTTAGAACTAATGATGATATGATGTCTAATATGCCAAGGTATATggattgtgtgtttgtaaatgaggtgtgtgtgtgtgtgtgaaagagtgtgacAAATCATTCTACATATTGACCATCAATGCCATCAATGAGAGACTGCCTTAAGATAATCCAGTGCTTTCATTATGAGAGTCTGTTGCAAAAGTACAAGCATTGGTATACATGTTCATCTTAATCGACAAAAACATCTGCTACTTATGCCAAAGAAGCTAAGAAATATACTATCACCTTGTGACCTTGTGGAATCTCCAAGTATCTTTAAAGTATTATATTTGTAAGAAAAActaaatgttgacatttgtagGACTGTTTATCAGGTATGGTTAATTCTATAGTGGCTTGTTTTTGAGTTgaacaaaatgtacagtactgtgtaaaagtcttaggcacccgaCGTTTTTTAGATCAGTTTTGCTTGTTTGTCTTCTGGAATAGCTACTGTGTCAATAGGagcaatttttatatttcacaaacaTACATTTTCAAACCAAACTCTtacatcttataccacagcactgttgaattctcagaaggtgttgattaattttctataacagtagctctgacagtagtgcagctgcaaatcacaggtttatatttgtATCGCACATAATCGCTCCACACAATAATGGTTCAAAAAAGTGTATGATCGtaaagatttctgtaaagagagATTTACGgaacatttatgaaagaagtctccagtgtcagcaatgTATCATCCTCTATAGGAGAGTCTTCTCTCTGACAcgctgcatttttaaaaaatattttaaaaaaaaatgtttatagctaCCTAATAGGAACCAccttgtcattctttaataaataagaaatgttagcatttagattattaaattgctgtgatataaaaggaataaaacacttcaggacctgCTATTATTGGAAGCTTTGcagttgtaacagtaactctggtTTAAATATAGCCactttttagatttaaaaaaacataatggagGGTGTCTGGTTTTACTTtcagaaacagaagcaagtgtgacaaagaactgtggcagattctcctaCATGCAGGGAAAACTTACAAGttgatttccttataaaactgcacaacagCATACCCAAGAAAACTGATGCAGTTTTAAAAGCAAAGGCTGGTCATGCTAAATATGGATTtgatttagtttattactgtttagttcacattataatcatttttatatatttacatacatttcattCCATCacttttgaaggcatctttgcctTTTTACAGAATATCTTCACGCGTGCCTAAGACATTTATGCAGTGCTTAATATTTTTCCCCTATCTCTGCAGGTATTGAGCTTCTGTTATTGGCAAGCTATGAATAACTAATCACTGGATTTCTGACTGAAAACTTTGTATGTTATGGattaacaaaacaacaactatGGGTTAAAACCCAACAACAAACTAAACCttgaaagtgattttttttactctgttcCTTGAGAGACTTCGTGTTCCTCCATTTAGTTTTGCTTCACTGCTTTTCATTCTTTCAAACAATTGAGCATTGCTCAGAAGAAATCCATCTCAACTTGTACCCACACAGACGGATATACCTCAGATGCCTGTATTTAGATACTTTGTAATATTATAAGAGCATATTCAAGAACAGAAACTGTTTGATTAATAAATTGgcaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01389 MME, CD10; neprilysin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111413 lncRNA downstream 95556 4546439 ~ 4546705 (-) True G93753
XR_004578376.1 lncRNA downstream 410430 4231460 ~ 4231831 (-) True LOC117597614
TU111372 lncRNA downstream 424419 4217578 ~ 4217842 (-) False LOC113534736
TU111366 lncRNA downstream 458268 4183755 ~ 4183993 (-) True G93716
TU111360 lncRNA downstream 469949 4172073 ~ 4172312 (-) True G93710
TU111561 lncRNA upstream 106565 4783925 ~ 4785131 (-) True G93896
TU111595 lncRNA upstream 216226 4893586 ~ 4894074 (-) True G93926
XR_004578349.1 lncRNA upstream 289274 4966634 ~ 4971603 (-) True LOC117597587
TU111675 lncRNA upstream 330065 5007425 ~ 5011433 (-) True G93988
TU111702 lncRNA upstream 398780 5076140 ~ 5179801 (-) False G94010
XM_026927724.2 mRNA downstream 7504 4630852 ~ 4634757 (-) True LOC113534774
XM_026927677.2 mRNA downstream 39300 4597574 ~ 4602961 (-) True LOC113534721
XM_026927678.2 mRNA downstream 48226 4589186 ~ 4594035 (-) True LOC113534722
XM_034305162.1 mRNA downstream 64689 4569303 ~ 4577572 (-) True LOC117597542
XM_034305350.1 mRNA downstream 79939 4558097 ~ 4562322 (-) True LOC113534723
XM_034305132.1 mRNA upstream 107837 4785197 ~ 4841034 (-) True LOC113534715
XM_026927337.2 mRNA upstream 250980 4928340 ~ 4930720 (-) True LOC113534489
XM_026927814.2 mRNA upstream 295648 4973008 ~ 4976264 (-) True p2ry1
XM_026927773.2 mRNA upstream 407914 5085274 ~ 5107393 (-) True LOC113534806
XM_026927159.2 mRNA upstream 677261 5354621 ~ 5372127 (-) True ulk3
XR_004578382.1 other downstream 149522 4492546 ~ 4492739 (-) True LOC117597618
TU111361 other downstream 468667 4173288 ~ 4173594 (-) True G93711
XR_004578380.1 other downstream 1110570 3429028 ~ 3531691 (-) False kcnab1a
TU110621 other downstream 1873963 2759612 ~ 2768298 (-) True G93047
TU110620 other downstream 1891092 2749388 ~ 2751169 (-) True G93046
trnam-cau_19 other upstream 1516715 6194075 ~ 6194147 (-) True trnam-cau_19
trnap-agg other upstream 2187908 6865268 ~ 6865339 (-) True trnap-agg
XR_003403498.2 other upstream 2470584 7147944 ~ 7157488 (-) False LOC113534453
XR_003403522.2 other upstream 2765013 7442373 ~ 7614096 (-) False shank3a
TU114125 other upstream 3790941 8468301 ~ 8478236 (-) False LOC113534821

Expression Profile